1Q7O

Determination of f-MLF-OH Peptide Structure with solid-state magic-angle spinning NMR Spectroscopy

• PDB DOI: https://doi.org/10.2210/pdb1Q7O/pdb
• BMRB: 5934

• Classification: DE NOVO PROTEIN
• Mutation(s): No 


• Deposited: 2003-08-19 Released: 2003-09-09 
• Deposition Author(s): Rienstra, C.M., Tucker-Kellogg, L., Jaroniec, C.P., Hohwy, M., Reif, B., McMahon, M.T., Tidor, B., Lozano-Perez, T., Griffin, R.G.

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Experimental Data Snapshot

• Method: SOLID-STATE NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

De novo determination of peptide structure with solid-state magic-angle spinning NMR Spectroscopy

Rienstra, C.M., Tucker-Kellogg, L., Jaroniec, C.P., Hohwy, M., Reif, B., McMahon, M.T., Tidor, B., Lozano-Perez, T., Griffin, R.G.

(2002) Proc Natl Acad Sci U S A 99: 10260-10265

• PubMed: 12149447 
• DOI: https://doi.org/10.1073/pnas.152346599
• Primary Citation of Related Structures:  
  1Q7O


• PubMed Abstract: 
  

  The three-dimensional structure of the chemotactic peptide N-formyl-l-Met-l-Leu-l-Phe-OH was determined by using solid-state NMR (SSNMR). The set of SSNMR data consisted of 16 (13)C-(15)N distances and 18 torsion angle constraints (on 10 angles), recorded from uniformly (13)C,(15)N- and (15)N-labeled samples. The peptide's structure was calculated by means of simulated annealing and a newly developed protocol that ensures that all of conformational space, consistent with the structural constraints, is searched completely. The result is a high-quality structure of a molecule that has thus far not been amenable to single-crystal diffraction studies. The extensions of the SSNMR techniques and computational methods to larger systems appear promising.

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Organizational Affiliation: 

Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 0.45 kDa 
• Atom Count: 30 
• Modelled Residue Count: 3 
• Deposited Residue Count: 3 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
chemotactic peptide	A	3	N/A	Mutation(s): 0

Small Molecules

Modified Residues  2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
FME	A	L-PEPTIDE LINKING	C6 H11 N O3 S		MET
MTY	A	L-PEPTIDE LINKING	C9 H11 N O3		TYR

Experimental Data & Validation

Experimental Data

• Method: SOLID-STATE NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-09-09 
Deposition Author(s): Rienstra, C.M., Tucker-Kellogg, L., Jaroniec, C.P., Hohwy, M., Reif, B., McMahon, M.T., Tidor, B., Lozano-Perez, T., Griffin, R.G.

Revision History  

• Version 1.0: 2003-09-09
  Type: Initial release
  
• Version 1.1: 2008-04-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Database references, Derived calculations