1WDI

Crystal Structure Of TT0907 From Thermus Thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb1WDI/pdb

• Classification: Structural genomics, unknown function
• Organism(s): Thermus thermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-05-17 Released: 2004-11-17 
• Deposition Author(s): Idaka, M., Yagi, H., Murayama, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.270 (Depositor) 
• R-Value Work: 
  0.237 (Depositor) 
• R-Value Observed: 
  0.237 (Depositor) 

Literature

Crystal Structure Of TT0907 From Thermus Thermophilus HB8

Idaka, M., Yagi, H., Murayama, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 38.67 kDa 
• Atom Count: 2,369 
• Modelled Residue Count: 294 
• Deposited Residue Count: 345 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein TT0907	A	345	Thermus thermophilus	Mutation(s): 0  EC: 2.4.99.17
UniProt
Find proteins for Q72JS5 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)) Explore Q72JS5  Go to UniProtKB:  Q72JS5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CIT	B [auth A]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.270 (Depositor) 
• R-Value Work:  0.237 (Depositor) 
• R-Value Observed: 0.237 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.791	α = 90
b = 77.275	β = 90
c = 73.561	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-11-17 
Deposition Author(s): Idaka, M., Yagi, H., Murayama, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2004-11-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-03-13
  Changes: Data collection, Database references, Derived calculations