1Y6J

L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135

• PDB DOI: https://doi.org/10.2210/pdb1Y6J/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Acetivibrio thermocellus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-12-06 Released: 2004-12-14 
• Deposition Author(s): Chen, L., Yang, H., Kataeva, I., Chen, L.R., Tempel, W., Lee, D., Habel, J., Zhou, W., Lin, D., Ljungdahl, L., Liu, Z.-J., Rose, J., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.01 Å
• R-Value Free: 
  0.271 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.229 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.229 (Depositor) 

Starting Model: experimental

Literature

L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135

Chen, L., Yang, H., Kataeva, I., Chen, L.R., Tempel, W., Lee, D., Habel, J., Zhou, W., Lin, D., Ljungdahl, L., Liu, Z.-J., Rose, J., Wang, B.-C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 34.87 kDa 
• Atom Count: 2,214 
• Modelled Residue Count: 289 
• Deposited Residue Count: 318 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-lactate dehydrogenase	A	318	Acetivibrio thermocellus	Mutation(s): 0  Gene Names: Cth-1135 EC: 1.1.1.27
UniProt
Find proteins for A3DCA4 (Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)) Explore A3DCA4  Go to UniProtKB:  A3DCA4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.01 Å
• R-Value Free:  0.271 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.229 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.229 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.36	α = 90
b = 73.36	β = 90
c = 191.73	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-12-14 
Deposition Author(s): Chen, L., Yang, H., Kataeva, I., Chen, L.R., Tempel, W., Lee, D., Habel, J., Zhou, W., Lin, D., Ljungdahl, L., Liu, Z.-J., Rose, J., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

Revision History  

• Version 1.0: 2004-12-14
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2023-08-23
  Changes: Data collection, Database references, Refinement description