2JZ5

NMR solution structure of protein VPA0419 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR68

• PDB DOI: https://doi.org/10.2210/pdb2JZ5/pdb
• BMRB: 15608

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Vibrio parahaemolyticus RIMD 2210633
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-12-28 Released: 2008-02-19 
• Deposition Author(s): Singarapu, K.K., Sukumaran, D.K., Eletski, A., Parish, D., Zhao, L., Jiang, M., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Swapna, G., Acton, T., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175.

Singarapu, K.K., Mills, J.L., Xiao, R., Acton, T., Punta, M., Fischer, M., Honig, B., Rost, B., Montelione, G.T., Szyperski, T.

(2010) Proteins 78: 779-784

• PubMed: 19927321 
• DOI: https://doi.org/10.1002/prot.22630
• Primary Citation of Related Structures:  
  2JZ5, 2K3I

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Organizational Affiliation: 

Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 10.3 kDa 
• Atom Count: 726 
• Modelled Residue Count: 91 
• Deposited Residue Count: 91 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein VPA0419	A	91	Vibrio parahaemolyticus RIMD 2210633	Mutation(s): 0  Gene Names: VPA0419
UniProt
Find proteins for Q87J34 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87J34  Go to UniProtKB:  Q87J34

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-02-19 
Deposition Author(s): Singarapu, K.K., Sukumaran, D.K., Eletski, A., Parish, D., Zhao, L., Jiang, M., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Swapna, G., Acton, T., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2008-02-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2020-02-19
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.3: 2023-06-14
  Changes: Database references, Other
• Version 1.4: 2024-05-08
  Changes: Data collection, Database references