2KIM

1.7-mm microcryoprobe solution NMR structure of an O6-methylguanine DNA methyltransferase family protein from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium target VpR247.

PDB DOI: https://doi.org/10.2210/pdb2KIM/pdb
BMRB: 16283

Classification: TRANSFERASE
Organism(s): Vibrio parahaemolyticus AQ3810
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2009-05-07 Released: 2009-07-07
Deposition Author(s): Aramini, J.M., Belote, R.L., Ciccosanti, C.T., Jiang, M., Rost, B., Nair, R., Swapna, G.V.T., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Solution NMR structure of an O6-methylguanine DNA methyltransferase family protein from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium target VpR247.

Aramini, J.M., Belote, R.L., Ciccosanti, C.T., Jiang, M., Rost, B., Nair, R., Swapna, G.V.T., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T.

To be published.

Macromolecule Content

Total Structure Weight: 12.34 kDa
Atom Count: 811
Modelled Residue Count: 102
Deposited Residue Count: 108
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
O6-methylguanine-DNA methyltransferase	A	108	Vibrio parahaemolyticus AQ3810	Mutation(s): 0 Gene Names: A79_1377, VP0951
UniProt
Find proteins for A6B4U8 (Vibrio parahaemolyticus serotype O3:K6 (strain AQ3810)) Explore A6B4U8 Go to UniProtKB: A6B4U8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6B4U8
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-07-07

Deposition Author(s):

Ciccosanti, C.T.

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2009-07-07
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2018-01-31
Changes: Derived calculations, Structure summary
Version 1.3: 2024-05-01
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.