The crystal structure of the domain of putative sensory box/GGDEF family protein from Vibrio parahaemolyticus
Wu, R., James, A., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative sensory box/GGDEF family protein | 287 | Vibrio parahaemolyticus RIMD 2210633 | Mutation(s): 3 Gene Names: VP0354 EC: 2.7.7.65 | ![]() | |
UniProt | |||||
Find proteins for Q87SR8 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87SR8 Go to UniProtKB: Q87SR8 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87SR8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | C [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ACY Query on ACY | F [auth B] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N | |||
NA Query on NA | D [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 72.98 | α = 90 |
b = 81.596 | β = 90 |
c = 121.851 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
SBC-Collect | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
HKL-3000 | phasing |