2P84

Crystal structure of ORF041 from Bacteriophage 37

• PDB DOI: https://doi.org/10.2210/pdb2P84/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Phietavirus pv37
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-03-21 Released: 2007-04-03 
• Deposition Author(s): Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Bain, K.T., Adams, J.M., Reyes, C., Lau, C., Gilmore, J., Rooney, I., Wasserman, T., Gheyi, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.273 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.208 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.212 (Depositor) 

Literature

Crystal structure of the hypothetical protein from Staphylococcus phage 37

Malashkevich, V.N., Toro, R., Sauder, J.M., Thompson, D.A., Bain, K.T., Adams, J.M., Gheyi, T., Lau, C., Gilmore, J., Wasserman, S.R., Schwinn, K.D., Emtage, S., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 17.29 kDa 
• Atom Count: 1,238 
• Modelled Residue Count: 133 
• Deposited Residue Count: 145 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ORF041	A	145	Phietavirus pv37	Mutation(s): 0
UniProt
Find proteins for Q4ZC86 (Staphylococcus phage 37) Explore Q4ZC86  Go to UniProtKB:  Q4ZC86

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.273 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.208 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.212 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.47	α = 90
b = 109.37	β = 90
c = 57.19	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SHELX	refinement
CCP4	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
CCP4	data scaling
SHELXS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-04-03 
Deposition Author(s): Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Bain, K.T., Adams, J.M., Reyes, C., Lau, C., Gilmore, J., Rooney, I., Wasserman, T., Gheyi, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2007-04-03
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Source and taxonomy, Version format compliance
• Version 1.3: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.4: 2019-07-24
  Changes: Data collection, Refinement description
• Version 1.5: 2021-02-03
  Changes: Database references, Structure summary
• Version 1.6: 2024-02-21
  Changes: Data collection, Database references