Citrullination-and mhc polymorphism-dependent conformational changes of a self peptide
Beltrami, A., Rossmann, M., Gabdulkhakov, A., Ziegler, A., Uchanska-Ziegler, B., Saenger, W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class I histocompatibility antigen, B-27 alpha chain | 276 | Homo sapiens | Mutation(s): 1 Gene Names: HLA-B, HLAB | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01889 (Homo sapiens) Explore P01889 Go to UniProtKB: P01889 | |||||
PHAROS: P01889 GTEx: ENSG00000234745 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01889 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 100 | Homo sapiens | Mutation(s): 0 Gene Names: B2M, CDABP0092, HDCMA22P | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769 | |||||
PHAROS: P61769 GTEx: ENSG00000166710 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DOUBLE CITRULLINATED VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR | 9 | N/A | Mutation(s): 0 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P32241 (Homo sapiens) Explore P32241 Go to UniProtKB: P32241 | |||||
PHAROS: P32241 GTEx: ENSG00000114812 | |||||
Entity Groups | |||||
UniProt Group | P32241 | ||||
Sequence AnnotationsExpand | |||||
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Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CIR Query on CIR | C | L-PEPTIDE LINKING | C6 H13 N3 O3 | ARG |
Length ( Å ) | Angle ( ˚ ) |
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a = 51.176 | α = 90 |
b = 82.428 | β = 110.15 |
c = 67.017 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data collection |
DENZO | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |