4RV0

Crystal structure of TN complex

• PDB DOI: https://doi.org/10.2210/pdb4RV0/pdb

• Classification: PROTEIN BINDING, TRANSPORT PROTEIN
• Organism(s): Drosophila melanogaster
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-11-23 Released: 2015-11-25 
• Deposition Author(s): Hao, Q., Jiao, S., Shi, Z.B., Zhou, Z.C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.253 (Depositor), 0.255 (DCC) 
• R-Value Work: 
  0.208 (Depositor), 0.209 (DCC) 
• R-Value Observed: 
  0.210 (Depositor) 

Literature

Crystal structure of TN complex

Hao, Q., Jiao, S., Shi, Z.B., Zhou, Z.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 4 assigned by authors.

Macromolecule Content

• Total Structure Weight: 116 kDa 
• Atom Count: 8,401 
• Modelled Residue Count: 914 
• Deposited Residue Count: 1,008 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transitional endoplasmic reticulum ATPase TER94	A, C, E, G	171	Drosophila melanogaster	Mutation(s): 0  Gene Names: CG2331, TER94, VCP EC: 3.6.4.6
UniProt
Find proteins for Q7KN62 (Drosophila melanogaster) Explore Q7KN62  Go to UniProtKB:  Q7KN62

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear protein localization protein 4 homolog	B, D, F, H	81	Drosophila melanogaster	Mutation(s): 0  Gene Names: CG4673, Npl4
UniProt
Find proteins for Q9VBP9 (Drosophila melanogaster) Explore Q9VBP9  Go to UniProtKB:  Q9VBP9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	I [auth A], J [auth A], K [auth C], L [auth C], M [auth G], N [auth G], O [auth G]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, C, E, G	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.253 (Depositor), 0.255 (DCC) 
• R-Value Work:  0.208 (Depositor), 0.209 (DCC) 
• R-Value Observed: 0.210 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.146	α = 90
b = 83.141	β = 90
c = 162.495	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
AutoSol	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-11-25 
Deposition Author(s): Hao, Q., Jiao, S., Shi, Z.B., Zhou, Z.C.

Revision History  

• Version 1.0: 2015-11-25
  Type: Initial release
  
• Version 1.1: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary