4Z6Y

Structure of the TBC1D7-TSC1 complex

• PDB DOI: https://doi.org/10.2210/pdb4Z6Y/pdb

• Classification: HYDROLASE INHIBITOR/PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-04-06 Released: 2016-04-20 
• Deposition Author(s): Gai, Z., Wu, G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.81 Å
• R-Value Free: 
  0.255 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.209 (Depositor) 

Literature

Structure of the TBC1D7-TSC1 complex

Gai, Z., Wu, G.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 152.03 kDa 
• Atom Count: 10,471 
• Modelled Residue Count: 1,304 
• Deposited Residue Count: 1,316 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TBC1 domain family member 7	A [auth B], C [auth G], E, G [auth A]	273	Homo sapiens	Mutation(s): 0  Gene Names: TBC1D7, TBC7, HSPC239
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0N9 (Homo sapiens) Explore Q9P0N9  Go to UniProtKB:  Q9P0N9
PHAROS:  Q9P0N9 GTEx:  ENSG00000145979

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hamartin	B [auth C], D [auth H], F, H [auth D]	56	Homo sapiens	Mutation(s): 0  Gene Names: TSC1, KIAA0243, TSC
UniProt & NIH Common Fund Data Resources
Find proteins for Q92574 (Homo sapiens) Explore Q92574  Go to UniProtKB:  Q92574
PHAROS:  Q92574 GTEx:  ENSG00000165699

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.81 Å
• R-Value Free:  0.255 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.209 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.991	α = 90
b = 145.689	β = 89.65
c = 114.758	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-04-20 
Deposition Author(s): Gai, Z., Wu, G.

Revision History  

• Version 1.0: 2016-04-20
  Type: Initial release
  
• Version 1.1: 2024-10-23
  Changes: Data collection, Database references, Derived calculations, Structure summary