Download MendeleyThiosulfate bound rat cysteine dioxygenase Y157H variant
Fellner, M., Wilbanks, S.M.To be published.
5EZW
Thiosulfate bound rat cysteine dioxygenase Y157H variant
- PDB DOI: https://doi.org/10.2210/pdb5EZW/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Rattus norvegicus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2015-11-27 Released: 2016-11-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.192 (Depositor), 0.200 (DCC)
- R-Value Work: 0.172 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.173 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cysteine dioxygenase type 1 | 210 | Rattus norvegicus | Mutation(s): 1 Gene Names: Cdo1 EC: 1.13.11.20 |  | |
UniProt | |||||
Find proteins for P21816 (Rattus norvegicus) Explore P21816 Go to UniProtKB: P21816 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P21816 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| THJ Query on THJ | C [auth A] | THIOSULFATE O3 S2 DHCDFWKWKRSZHF-UHFFFAOYSA-L |  | ||
| FE2 Query on FE2 | B [auth A] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.192 (Depositor), 0.200 (DCC)
- R-Value Work: 0.172 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.173 (Depositor)
Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.75 | α = 90 |
| b = 57.75 | β = 90 |
| c = 122.42 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2016-11-09 Deposition Author(s): Fellner, M., Tchesnokov, E.P., Jameson, G.N.L., Wilbanks, S.M.
Revision History (Full details and data files)
- Version 1.0: 2016-11-09
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
