5HLE

Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the ADP state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 
    0.287 (Depositor), 0.290 (DCC) 
  • R-Value Work: 
    0.211 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 
    0.218 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ADPClick on this verticalbar to view details

This is version 1.2 of the entry. See complete history


Literature

Backwards motion in kinesin-14 requires neck-mimic to control a neck-helix swing.

Yamagishi, M.Shigematsu, H.Yokoyama, T.Kikkawa, M.Sugawa, M.Aoki, M.Shirouzu, M.Yajima, J.Nitta, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein claret segregational,Minus-end kinesin-1/kinesin-14,Protein claret segregational371Drosophila melanogasterRattus norvegicusMutation(s): 0 
EC: 3.6.4
UniProt
Find proteins for P56536 (Rattus norvegicus)
Explore P56536 
Go to UniProtKB:  P56536
Find proteins for P20480 (Drosophila melanogaster)
Explore P20480 
Go to UniProtKB:  P20480
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP20480P56536
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free:  0.287 (Depositor), 0.290 (DCC) 
  • R-Value Work:  0.211 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 0.218 (Depositor) 
Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 112.858α = 90
b = 112.858β = 90
c = 72.11γ = 120
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ADPClick on this verticalbar to view details

Entry History & Funding Information

Deposition Data

  • Released Date: 2017-01-25 
  • Deposition Author(s): Nitta, R.

Funding OrganizationLocationGrant Number
Japan--

Revision History  (Full details and data files)

  • Version 1.0: 2017-01-25
    Type: Initial release
  • Version 1.1: 2020-02-19
    Changes: Data collection
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Refinement description