5ZCJ

Crystal structure of complex

• PDB DOI: https://doi.org/10.2210/pdb5ZCJ/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2018-02-17 Released: 2018-06-27 
• Deposition Author(s): Wang, J., Yuan, Z., Cui, Y., Xie, R., Wang, M., Ma, Y., Yu, X., Liu, X.
• Funding Organization(s): National Natural Science Foundation of China

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.219 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.190 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.191 (Depositor) 

Literature

Crystal structure of complex

Wang, J., Yuan, Z., Cui, Y., Xie, R., Wang, M., Ma, Y., Yu, X., Liu, X.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A2B1 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: isothermal titration calorimetry

Macromolecule Content

• Total Structure Weight: 66.16 kDa 
• Atom Count: 4,523 
• Modelled Residue Count: 522 
• Deposited Residue Count: 600 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tudor-interacting repair regulator protein	A, B	210	Homo sapiens	Mutation(s): 0  Gene Names: NUDT16L1, SDOS, TIRR
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRJ7 (Homo sapiens) Explore Q9BRJ7  Go to UniProtKB:  Q9BRJ7
GTEx:  ENSG00000168101

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TP53-binding protein 1	C	180	Homo sapiens	Mutation(s): 0  Gene Names: TP53BP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q12888 (Homo sapiens) Explore Q12888  Go to UniProtKB:  Q12888
PHAROS:  Q12888 GTEx:  ENSG00000067369

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.219 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.190 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.191 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.144	α = 90
b = 103.922	β = 95.46
c = 61.47	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-06-27 
Deposition Author(s): Wang, J., Yuan, Z., Cui, Y., Xie, R., Wang, M., Ma, Y., Yu, X., Liu, X.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	81672794

Revision History  

• Version 1.0: 2018-06-27
  Type: Initial release
  
• Version 1.1: 2024-03-27
  Changes: Data collection, Database references