7S7G

Crystal Structure Analysis of Human VLCAD

• PDB DOI: https://doi.org/10.2210/pdb7S7G/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-09-15 Released: 2022-09-28 
• Deposition Author(s): Seo, H.-S., Dhe-Paganon, S.
• Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.34 Å
• R-Value Free: 0.169 
• R-Value Work: 0.146 
• R-Value Observed: 0.147 

Literature

Crystal Structure Analysis of Human VLCAD

Seo, H.-S., Dhe-Paganon, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 67.61 kDa 
• Atom Count: 4,985 
• Modelled Residue Count: 571 
• Deposited Residue Count: 617 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	A	617	Homo sapiens	Mutation(s): 0  Gene Names: ACADVL, VLCAD EC: 1.3.8.9
UniProt & NIH Common Fund Data Resources
Find proteins for P49748 (Homo sapiens) Explore P49748  Go to UniProtKB:  P49748
PHAROS:  P49748 GTEx:  ENSG00000072778

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD	B [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.34 Å
• R-Value Free: 0.169 
• R-Value Work: 0.146 
• R-Value Observed: 0.147 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.26	α = 90
b = 108.27	β = 90
c = 149.65	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
xia2	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-09-28 
Deposition Author(s): Seo, H.-S., Dhe-Paganon, S.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	--

Revision History  

• Version 1.0: 2022-09-28
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description