7ZBR

Crystal Structure of full-length Bartonella Effector protein 1

• PDB DOI: https://doi.org/10.2210/pdb7ZBR/pdb

• Classification: TOXIN
• Organism(s): Bartonella clarridgeiae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-03-24 Released: 2023-04-05 
• Deposition Author(s): Huber, M.
• Funding Organization(s): Swiss National Science Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 
  0.303 (Depositor), 0.300 (DCC) 
• R-Value Work: 
  0.270 (Depositor), 0.270 (DCC) 
• R-Value Observed: 
  0.273 (Depositor) 

Starting Models: experimental

Literature

Full-length structure of a FIC effector protein from Bartonella reveals a novel structural domain

Huber, M., Wagner, A., Reiners, J., Seyfert, C.E.M., Smits, S.H.J., Schirmer, T., Dehio, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: SAXS

Macromolecule Content

• Total Structure Weight: 63.82 kDa 
• Atom Count: 4,196 
• Modelled Residue Count: 531 
• Deposited Residue Count: 566 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bartonella effector protein (Bep) substrate of VirB T4SS	A	566	Bartonella clarridgeiae	Mutation(s): 0  Gene Names: BARCL_0069 EC: 2.7.7.108
UniProt
Find proteins for E6YFW2 (Bartonella clarridgeiae (strain CCUG 45776 / CIP 104772 / 73)) Explore E6YFW2  Go to UniProtKB:  E6YFW2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free:  0.303 (Depositor), 0.300 (DCC) 
• R-Value Work:  0.270 (Depositor), 0.270 (DCC) 
• R-Value Observed: 0.273 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.492	α = 90
b = 70.492	β = 90
c = 213.961	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-04-05 
Deposition Author(s): Huber, M.

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Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	--

Revision History  

• Version 1.0: 2023-04-05
  Type: Initial release
  
• Version 1.1: 2024-02-07
  Changes: Data collection, Refinement description