8JGN

Cryo-EM structure of alpha/beta hydrolase DANGEROUS MIX 3 (DM3) forms compartmentalized hexamer structure

• PDB DOI: https://doi.org/10.2210/pdb8JGN/pdb
• EM Map EMD-36240: EMDB EMDataResource

• Classification: HYDROLASE
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-05-21 Released: 2024-12-25 
• Deposition Author(s): Kim, G., Song, J.J.
• Funding Organization(s): National Research Foundation (NRF, Korea)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.39 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure of alpha/beta hydrolase DANGEROUS MIX 3 (DM3) forms compartmentalized hexamer structure

Kim, G., Song, J.J.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 302.6 kDa 
• Atom Count: 21,360 
• Modelled Residue Count: 2,688 
• Deposited Residue Count: 2,688 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AT3g61540/F2A19_140	A, B, C, D, E, F	448	Arabidopsis thaliana	Mutation(s): 0  Gene Names: F2A19.140, At3g61540
UniProt
Find proteins for Q9M314 (Arabidopsis thaliana) Explore Q9M314  Go to UniProtKB:  Q9M314

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.39 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-25 
Deposition Author(s): Kim, G., Song, J.J.

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Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2020R1A2B5B03001517

Revision History  

• Version 1.0: 2024-12-25
  Type: Initial release