8VCG

Mutant Src SH2 domain in complex with phosphotyrosine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free: 
    0.176 (Depositor), 0.182 (DCC) 
  • R-Value Work: 
    0.122 (Depositor), 0.128 (DCC) 
  • R-Value Observed: 
    0.124 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted PTRClick on this verticalbar to view details

This is version 1.0 of the entry. See complete history


Literature

Engineered Mutant Src Sh2 Domain

Hashem, A.Nyovanie, S.Patskovsky, Y.Krogsgaard, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 3 of Proto-oncogene tyrosine-protein kinase Src126Homo sapiensMutation(s): 0 
Gene Names: SRCSRC1
EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for P12931 (Homo sapiens)
Explore P12931 
Go to UniProtKB:  P12931
PHAROS:  P12931
GTEx:  ENSG00000197122 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12931
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PTR (Subject of Investigation/LOI)
Query on PTR

Download Ideal Coordinates CCD File 
B [auth A]O-PHOSPHOTYROSINE
C9 H12 N O6 P
DCWXELXMIBXGTH-QMMMGPOBSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.61 Å
  • R-Value Free:  0.176 (Depositor), 0.182 (DCC) 
  • R-Value Work:  0.122 (Depositor), 0.128 (DCC) 
  • R-Value Observed: 0.124 (Depositor) 
Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.674α = 90
b = 67.674β = 90
c = 46.759γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted PTRClick on this verticalbar to view details

Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCA243486-01A1

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release