Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyCoat and nuclear envelope proteins8054129 3002276 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyScaffolding nucleoporins8090980 3002255 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090978 3000456 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00400e4xmnA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
BPF12110e4xmnB1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF12110ECOD (1.6)
C [auth F]PF04121e4xmnF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: PF04121ECOD (1.6)
D [auth E]PF11715e4xmnE1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF11715ECOD (1.6)
D [auth E]PF22114e4xmnE2 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: PF22114ECOD (1.6)
D [auth E]F_UNCLASSIFIEDe4xmnE3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: F_UNCLASSIFIEDECOD (1.6)
E [auth D]PF07575e4xmnD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF07575ECOD (1.6)
F [auth L]PF07654e4xmnL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
F [auth L]PF07686e4xmnL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
G [auth H]PF07654e4xmnH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
G [auth H]PF07686e4xmnH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
F [auth L]Antibody 87 L-KAPPA Homo sapiens (human) IGKV1D-13*01, IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202416-0)
G [auth H]Antibody 87 VH-CH1 Homo sapiens (human) IGHV3-21*01, IGHV3-21*02, IGHV3-64*04, IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHV3-74*01, IGHV3-74*02, IGHV3-23*04, IGHV3-21*04, IGHV3-21*03, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*04 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202416-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
F [auth L]Light ChainIGKV1D Kappanucleoporin nup120SAbDab (2024-04-26)
G [auth H]Heavy ChainIGHV3 -nucleoporin nup120SAbDab (2024-04-26)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF12110Nuclear protein 96 (Nup96)Nuclear protein 96Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ...Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. [1] [2]
Domain
C [auth F]PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
E [auth D]PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Protein transport protein SEC13
Nucleoporin NUP145
C [auth F]Nucleoporin NUP84
D [auth E]Nucleoporin NUP120
E [auth D]Nucleoporin NUP85
F [auth L]Antibody 87 light chain---
G [auth H]Antibody 87 heavy chain---