Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth L]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
E [auth P]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
M [auth D]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
Q [auth H]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
C [auth N]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
K [auth B]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
O [auth F]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
D [auth O]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
L [auth C]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
P [auth G]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
R [auth K]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
B [auth M]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
F [auth Q]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
J [auth A]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
N [auth E]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
USCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]PF00125e5oy7L1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
BA [auth b]PF00125e5oy7b1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
E [auth P]PF00125e5oy7P1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
FA [auth f]PF00125e5oy7f1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
M [auth D]PF00125e5oy7D1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
Q [auth H]PF00125e5oy7H1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
TPF00125e5oy7T1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
XPF00125e5oy7X1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
C [auth N]PF15511e5oy7N1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
DA [auth d]PF15511e5oy7d1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
G [auth R]PF15511e5oy7R1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
I [auth J]PF15511e5oy7J1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
K [auth B]PF15511e5oy7B1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
O [auth F]PF15511e5oy7F1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
VPF15511e5oy7V1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
ZPF15511e5oy7Z1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
AA [auth a]PF00125,PF16211e5oy7a1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
D [auth O]PF00125,PF16211e5oy7O1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
EA [auth e]PF00125,PF16211e5oy7e1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
L [auth C]PF00125,PF16211e5oy7C1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
P [auth G]PF00125,PF16211e5oy7G1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
R [auth K]PF00125,PF16211e5oy7K1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
SPF00125,PF16211e5oy7S1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
WPF00125,PF16211e5oy7W1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
B [auth M]PF00125e5oy7M1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
CA [auth c]PF00125e5oy7c1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
F [auth Q]PF00125e5oy7Q1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
H [auth I]PF00125e5oy7I1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
J [auth A]PF00125e5oy7A1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
N [auth E]PF00125e5oy7E1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
UPF00125e5oy7U1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
YPF00125e5oy7Y1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone H2B 1.1 -
Histone H4 -
Histone H2A -
HA [auth h]DNA (619-MER)---
Histone H3 -
GA [auth g]DNA (619-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR000558Histone H2BFamily
IPR009072Histone-foldHomologous Superfamily
IPR001951Histone H4Family
IPR035425CENP-T/Histone H4, histone foldDomain
IPR019809Histone H4, conserved siteConserved Site
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR002119Histone H2AFamily
IPR032454Histone H2A, C-terminal domainDomain
IPR032458Histone H2A conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR000164Histone H3/CENP-AFamily