Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyVirus ectodomain8085614 3001628 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyVirus ectodomain8085614 3001628 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyVirus ectodomain8085614 3001628 SCOP2B (2022-06-29)
DSCOP2B Superfamilygp120 core8080371 3001390 SCOP2B (2022-06-29)
ESCOP2B Superfamilygp120 core8080371 3001390 SCOP2B (2022-06-29)
FSCOP2B Superfamilygp120 core8080371 3001390 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8091527 3000071 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8091527 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF00517e5viyB1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: PF00517ECOD (1.6)
CPF00517e5viyC1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: PF00517ECOD (1.6)
APF00517e5viyA1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: PF00517ECOD (1.6)
DPF00516e5viyD3 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: PF00516ECOD (1.6)
DPF00516e5viyD1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
DPF00516e5viyD2 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
EPF00516e5viyE1 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: PF00516ECOD (1.6)
EPF00516e5viyE3 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
EPF00516e5viyE2 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
FPF00516e5viyF1 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: PF00516ECOD (1.6)
FPF00516e5viyF2 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF00516ECOD (1.6)
FPF00516e5viyF3 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: PF00516ECOD (1.6)
GPF07654e5viyG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
GPF07686e5viyG2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
IPF07654e5viyI1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
IPF07686e5viyI2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
HPF07654e5viyH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
HPF07686e5viyH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
JPF07654e5viyJ2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
JPF07686e5viyJ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
KPF07654e5viyK2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
KPF07686e5viyK1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
MPF07654e5viyM2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
MPF07686e5viyM1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
OPF07654e5viyO2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
OPF07686e5viyO1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
LPF07654e5viyL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
LPF07686e5viyL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
NPF07654e5viyN2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
NPF07686e5viyN1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
PPF07654e5viyP1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
PPF07686e5viyP2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
G, I
Fab BG1 L-KAPPA Homo sapiens (human) IGKV1-39*01, IGKV1D-39*01, IGKJ3*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202416-0)
H, J
Fab BG1 VH-CH1 Homo sapiens (human) IGHV3-49*04, IGHJ2*01, IGHJ3*01, IGHG1*03, IGHG1*08, IGHG1*06 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202416-0)
K, M, O
Fab 8ANC195 VH-CH1 Homo sapiens (human) IGHV1-69*01, IGHV1-69*04, IGHV1-69*06, IGHV1-69*09, IGHV1-69*10, IGHV1-69*11, IGHV1-69*12, IGHV1-69*13, IGHV1-69*14, IGHV1-69D*01, IGHV1-69*15, IGHV1-69*17, IGHJ5*01, IGHG1*03, IGHG1*08, IGHG1*06 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202416-0)
L, N, P
Fab 8ANC195 L-KAPPA Homo sapiens (human) IGKV1-5*01, IGKV1-5*02, IGKV1-5*03, IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202416-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
G, I
Light ChainIGKV1 Kappaenvelope glycoprotein gp160SAbDab (2024-04-26)
L, N, P
Light ChainIGKV1 Kappaenvelope glycoprotein gp160, envelope glycoprotein gp160 | envelope glycoprotein gp160SAbDab (2024-04-26)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00517Retroviral envelope protein (GP41)Retroviral envelope protein- Family
D, E, F
PF00516Envelope glycoprotein GP120 (GP120)Envelope glycoprotein GP120- Family
G, I
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
H, J
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
H, J
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
K, M, O
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
K, M, O
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
L, N, P
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
L, N, P
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Envelope glycoprotein gp160
D, E, F
Envelope glycoprotein gp160
G, I
BG1 Fab light chain
H, J
BG1 Fab heavy chain- -
K, M, O
8ANC195 G52K5 Fab heavy chain- -
L, N, P
8ANC195 G52K5 Fab light chain- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
A, B, C
IPR036377Gp120 core superfamilyHomologous Superfamily
A, B, C
IPR000328Retroviral envelope protein GP41-likeDomain
A, B, C
IPR037527Envelope glycoprotein Gp160Family
D, E, F
IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
D, E, F
IPR036377Gp120 core superfamilyHomologous Superfamily
D, E, F
IPR000328Retroviral envelope protein GP41-likeDomain
D, E, F
IPR037527Envelope glycoprotein Gp160Family
G, I
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
G, I
IPR003597Immunoglobulin C1-setDomain
G, I
IPR013783Immunoglobulin-like foldHomologous Superfamily
G, I
IPR007110Immunoglobulin-like domainDomain
G, I
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
H, J
IPR003597Immunoglobulin C1-setDomain
H, J
IPR013783Immunoglobulin-like foldHomologous Superfamily
H, J
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
H, J
IPR003599Immunoglobulin subtypeDomain
H, J
IPR013106Immunoglobulin V-set domainDomain
H, J
IPR007110Immunoglobulin-like domainDomain
H, J
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
K, M, O
IPR003597Immunoglobulin C1-setDomain
K, M, O
IPR013783Immunoglobulin-like foldHomologous Superfamily
K, M, O
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
K, M, O
IPR003599Immunoglobulin subtypeDomain
K, M, O
IPR013106Immunoglobulin V-set domainDomain
K, M, O
IPR007110Immunoglobulin-like domainDomain
K, M, O
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
L, N, P
IPR003597Immunoglobulin C1-setDomain
L, N, P
IPR013783Immunoglobulin-like foldHomologous Superfamily
L, N, P
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
L, N, P
IPR003599Immunoglobulin subtypeDomain
L, N, P
IPR013106Immunoglobulin V-set domainDomain
L, N, P
IPR007110Immunoglobulin-like domainDomain
L, N, P
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site