Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5wuxa_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd5wuxc_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth H]d5wuxh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5wuxb2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5wuxb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd5wuxd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd5wuxd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth L]d5wuxl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth L]d5wuxl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth E]d5wuxe_ All beta proteins TNF-like TNF-like TNF-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth F]d5wuxf_ All beta proteins TNF-like TNF-like TNF-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
I [auth G]d5wuxg_ All beta proteins TNF-like TNF-like TNF-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth E]SCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AV-set_8e5wuxA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
AC1-set_1e5wuxA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
CV-set_8e5wuxC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
CC1-set_1e5wuxC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
E [auth H]V-set_8e5wuxH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
E [auth H]C1-set_1e5wuxH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
BC1-set_4e5wuxB2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
BV-sete5wuxB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
DC1-set_4e5wuxD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
DV-sete5wuxD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
F [auth L]C1-set_4e5wuxL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
F [auth L]V-sete5wuxL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
G [auth E]TNFe5wuxE1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: TNFECOD (1.6)
H [auth F]TNFe5wuxF1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: TNFECOD (1.6)
I [auth G]TNFe5wuxG1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: TNFECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
E [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
G [auth E]2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H [auth F]2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I [auth G]2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A,
C,
E [auth H]
Fab certolizumab VH-CH1 Homo sapiens (human) IGHV3-23*04, IGHV3S5*01, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202415-0)
B,
D,
F [auth L]
Fab certolizumab L-KAPPA Homo sapiens (human) IGKV1-16*01, IGKV1D-16*01, IGKV1-20*01, IGKV1S17*01, IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202415-0)
G [auth E],
H [auth F],
I [auth G]
Tumor necrosis factor alpha TNF Homo sapiens (human) TNF*01 R-LIKE-DOMAIN TNF (Pr77-233) RPI TNF IMGT (202415-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A,
C,
E [auth H]
Heavy ChainIGHV3 -tumor necrosis factor alphaSAbDab (2024-04-19)
B,
D,
F [auth L]
Light ChainIGKV1 Kappatumor necrosis factor alphaSAbDab (2024-04-19)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

ChainNameTargetProvenance Source
A,
C,
E [auth H]
Certolizumab TNF/TNFATherapeutic SAbDab (2024-04-19)
B,
D,
F [auth L]
Certolizumab TNF/TNFATherapeutic SAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth E],
H [auth F],
I [auth G]
PF00229TNF(Tumour Necrosis Factor) family (TNF)TNF(Tumour Necrosis Factor) family- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
C,
E [auth H]
heavy---
B,
D,
F [auth L]
light---
G [auth E],
H [auth F],
I [auth G]
Tumor necrosis factor alpha

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
G [auth E],
H [auth F],
I [auth G]
PharosP01375