5Z3V
Structure of Snf2-nucleosome complex at shl-2 in ADP BeFx state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
I [auth H] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth O] | PF00176 | e5z3vO2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00176 | ECOD (1.6) |
A [auth O] | PF00176,PF00271 | e5z3vO1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00176,PF00271 | ECOD (1.6) |
B [auth A] | PF00125 | e5z3vA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
F [auth E] | PF00125 | e5z3vE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
G [auth F] | PF15511 | e5z3vF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
C [auth B] | PF15511 | e5z3vB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
D [auth C] | PF00125,PF16211 | e5z3vC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
H [auth G] | PF00125,PF16211 | e5z3vG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
E [auth D] | PF00125 | e5z3vD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
I [auth H] | PF00125 | e5z3vH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth O] | PF14619 | Snf2-ATP coupling, chromatin remodelling complex (SnAC) | Snf2-ATP coupling, chromatin remodelling complex | This domain appears to play a crucial role in chromatin remodelling for yeast SWI/SNF. It binds histones. It is required for mobilising nucleosomes and lies within the catalytic subunit of the yeast SWI/SNF. It is found to be universally conserved [1 ... | Domain |
A [auth O] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
A [auth O] | PF00176 | SNF2-related domain (SNF2-rel_dom) | SNF2-related domain | This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ... | Domain |
B [auth A], F [auth E] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
C [auth B], G [auth F] | PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain |
D [auth C], H [auth G] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
D [auth C], H [auth G] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
E [auth D], I [auth H] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |