6DNC

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2 FamilyRibosomal protein L1p/L10e-like8065349 4002929 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyRibosomal protein L1p/L10e-like8065350 3001911 SCOP2 (2022-06-29)
GSCOP2 FamilyRibosomal protein L38089147 4002103 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyTranslational proteins8089148 3000811 SCOP2 (2022-06-29)
OSCOP2B Superfamily50S Ribosomal protein L14-like8097312 3000433 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
XSCOP2 FamilyL23p8077098 4000943 SCOP2 (2022-06-29)
XSCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8077099 3000210 SCOP2 (2022-06-29)
YSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
IASCOP2 FamilyRibosomal protein L35p8097309 4003406 SCOP2 (2022-06-29)
IASCOP2 SuperfamilyL35p-like8097310 3000790 SCOP2 (2022-06-29)
JASCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
NA [auth OA]SCOP2 FamilyRibosomal protein S2-like8063841 4003744 SCOP2 (2022-06-29)
NA [auth OA]SCOP2 SuperfamilySIS domain/Ribosomal protein S2-like8063842 3001397 SCOP2 (2022-06-29)
PA [auth QA]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083398 3001473 SCOP2B (2022-06-29)
RA [auth SA]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
SA [auth TA]SCOP2B SuperfamilyRibosomal protein S78077981 3000799 SCOP2B (2022-06-29)
TA [auth UA]SCOP2B SuperfamilyRibosomal protein S88079057 3000709 SCOP2B (2022-06-29)
UA [auth VA]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082663 3000100 SCOP2B (2022-06-29)
VA [auth WA]SCOP2 FamilyRibosomal protein S108097313 4001240 SCOP2 (2022-06-29)
VA [auth WA]SCOP2 SuperfamilyRibosomal protein S108097314 3001336 SCOP2 (2022-06-29)
WA [auth XA]SCOP2B SuperfamilyTranslational machinery components8093496 3000571 SCOP2B (2022-06-29)
XA [auth YA]SCOP2B SuperfamilyNucleic acid-binding proteins8097316 3000135 SCOP2B (2022-06-29)
YA [auth ZA]SCOP2B SuperfamilyS13-like H2TH domain8098358 3000053 SCOP2B (2022-06-29)
BB [auth CB]SCOP2B SuperfamilyRibosomal protein S168097318 3000680 SCOP2B (2022-06-29)
CB [auth DB]SCOP2B SuperfamilyNucleic acid-binding proteins8059278 3000135 SCOP2B (2022-06-29)
GB [auth HB]SCOP2B SuperfamilyRibosomal protein S218053090 3002159 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ERibosomal_L1_2nd_1e6dncE1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
ERibosomal_L1_1ste6dncE2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1stECOD (1.6)
FRibosomal_L2_1e6dncF1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
FRibosomal_L2_Ce6dncF2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
GRibosomal_L3e6dncG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
HRibosomal_L4e6dncH1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
IRibosomal_L5_Ce6dncI1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
JRibosomal_L6e6dncJ1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
JRibosomal_L6_1e6dncJ2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
KRibosomal_L9_Ne6dncK1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
KRibosomal_L9_C_1e6dncK2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
LRibosomal_L10e6dncL1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
MRibosomal_L11e6dncM1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
MRibosomal_L11_Ne6dncM2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
NRibosomal_L13e6dncN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
ORibosomal_L14e6dncO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
PRibosomal_L27Ae6dncP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
QRibosomal_L16e6dncQ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
RRibosomal_L17_1e6dncR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
SRibosomal_L18pe6dncS1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
TRibosomal_L19e6dncT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
URibosomal_L20e6dncU1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
VRibosomal_L21pe6dncV1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
WRibosomal_L22e6dncW1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
XRibosomal_L23_2e6dncX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
Yribosomal_L24_1e6dncY1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
ZRibosomal_L25pe6dncZ1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
AARibosomal_L27e6dncAA1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
BARibosomal_L28e6dncBA1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
CARibosomal_L29e6dncCA1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
DARibosomal_L30e6dncDA1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
EARibosomal_L31e6dncEA1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
FARibosomal_L32pe6dncFA1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
GARibosomal_L33e6dncGA1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
HARibosomal_L34e6dncHA1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
IARibosomal_L35pe6dncIA1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
JARibosomal_L36e6dncJA1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
MAPCRF_Ne6dncMA1 A: alpha bundlesX: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology)H: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology)T: Release factor (Pfam 00472) N-terminal alpha helical domainF: PCRF_NECOD (1.6)
MAPCRF_Ce6dncMA3 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin-like domain in release factor (From Topology)T: Ferredoxin-like domain in release factorF: PCRF_CECOD (1.6)
MARF-1_Ne6dncMA4 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
MARF-1_Ce6dncMA2 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_CECOD (1.6)
NA [auth OA]Ribosomal_S2e6dncOA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
OA [auth PA]Ribosomal_S3_Ce6dncPA1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
OA [auth PA]KH_2_1e6dncPA2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
PA [auth QA]S4e6dncQA1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
QA [auth RA]Ribosomal_S5_Ce6dncRA1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
QA [auth RA]Ribosomal_S5e6dncRA2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
RA [auth SA]Ribosomal_S6e6dncSA1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
SA [auth TA]Ribosomal_S7_1e6dncTA1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
TA [auth UA]Ribosomal_S8_Ne6dncUA2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
TA [auth UA]Ribosomal_S8_Ce6dncUA1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
UA [auth VA]Ribosomal_S9e6dncVA1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
VA [auth WA]Ribosomal_S10e6dncWA1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
WA [auth XA]Ribosomal_S11e6dncXA1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
XA [auth YA]Ribosom_S12_S23e6dncYA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
YA [auth ZA]Ribosomal_S13_1e6dncZA1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
ZA [auth AB]Ribosomal_S14_1e6dncAB1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
AB [auth BB]Ribosomal_S15_1e6dncBB1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
BB [auth CB]Ribosomal_S16e6dncCB1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
CB [auth DB]Ribosomal_S17_1e6dncDB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
DB [auth EB]Ribosomal_S18e6dncEB1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
EB [auth FB]Ribosomal_S19e6dncFB1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
FB [auth GB]Ribosomal_S20pe6dncGB1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
GB [auth HB]Ribosomal_S21e6dncHB1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
PF03462PCRF domain (PCRF)PCRF domainThis domain is found in peptide chain release factors.Domain
PF00472RF-1 domain (RF-1)RF-1 domain- Family
NA [auth OA]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
OA [auth PA]PF07650KH domain (KH_2)KH domain- Domain
OA [auth PA]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
PA [auth QA]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PA [auth QA]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
QA [auth RA]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
QA [auth RA]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
RA [auth SA]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
SA [auth TA]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
TA [auth UA]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
UA [auth VA]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
VA [auth WA]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
WA [auth XA]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
XA [auth YA]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
YA [auth ZA]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
ZA [auth AB]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
AB [auth BB]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
BB [auth CB]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
CB [auth DB]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
DB [auth EB]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
EB [auth FB]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
FB [auth GB]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
GB [auth HB]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S ribosomal RNA---
23S ribosomal RNA---
5S ribosomal RNA---
D, LA
tRNA(fMet)---
50S ribosomal protein L1
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
50S ribosomal protein L6
50S ribosomal protein L9
50S ribosomal protein L10
50S ribosomal protein L11
50S ribosomal protein L13
50S ribosomal protein L14
50S ribosomal protein L15
50S ribosomal protein L16
50S ribosomal protein L17
50S ribosomal protein L18
50S ribosomal protein L19
50S ribosomal protein L20
50S ribosomal protein L21
50S ribosomal protein L22
50S ribosomal protein L23
50S ribosomal protein L24
50S ribosomal protein L25
50S ribosomal protein L27
50S ribosomal protein L28
50S ribosomal protein L29
50S ribosomal protein L30
50S ribosomal protein L31
50S ribosomal protein L32
50S ribosomal protein L33
50S ribosomal protein L34
50S ribosomal protein L35
50S ribosomal protein L36
mRNA---
Peptide chain release factor 1
NA [auth OA]30S ribosomal protein S2
OA [auth PA]30S ribosomal protein S3
PA [auth QA]30S ribosomal protein S4
QA [auth RA]30S ribosomal protein S5
RA [auth SA]30S ribosomal protein S6
SA [auth TA]30S ribosomal protein S7
TA [auth UA]30S ribosomal protein S8
UA [auth VA]30S ribosomal protein S9
VA [auth WA]30S ribosomal protein S10
WA [auth XA]30S ribosomal protein S11
XA [auth YA]30S ribosomal protein S12
YA [auth ZA]30S ribosomal protein S13
ZA [auth AB]30S ribosomal protein S14
AB [auth BB]30S ribosomal protein S15
BB [auth CB]30S ribosomal protein S16
CB [auth DB]30S ribosomal protein S17
DB [auth EB]30S ribosomal protein S18
EB [auth FB]30S ribosomal protein S19
FB [auth GB]30S ribosomal protein S20
GB [auth HB]30S ribosomal protein S21

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
IPR023674Ribosomal protein uL1-likeHomologous Superfamily
IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
IPR002143Large ribosomal subunit protein uL1Family
IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
IPR000244Large ribosomal subunit protein bL9Family
IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
IPR001790Large ribosomal subunit protein uL10Family
IPR022973Large ribosomal subunit protein uL10, bacterialFamily
IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
IPR000911Ribosomal protein uL11Family
IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IPR000218Large ribosomal subunit protein uL14Family
IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR030878Large ribosomal subunit protein uL15Family
IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
IPR000456Large ribosomal subunit protein bL17Family
IPR005484Large ribosomal subunit protein uL18Family
IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
IPR001857Large ribosomal subunit protein bL19Family
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR005824KOWDomain
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR020055Ribosomal protein bL25, short-formFamily
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
IPR001684Large ribosomal subunit protein bL27Family
IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
IPR026569Large ribosomal subunit protein bL28Family
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
IPR001854Large ribosomal subunit protein uL29Family
IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR002150Large ribosomal subunit protein bL31 type A/BFamily
IPR027491Large ribosomal subunit protein bL31 type AFamily
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
IPR002677Large ribosomal subunit protein bL32Family
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
IPR001705Large ribosomal subunit protein bL33Family
IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
IPR000271Large ribosomal subunit protein bL34Family
IPR021137Large ribosomal subunit protein bL35-likeFamily
IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
IPR001706Large ribosomal subunit protein bL35Family
IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
IPR000473Large ribosomal subunit protein bL36Family
IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
IPR004373Peptide chain release factor 1Family
IPR000352Peptide chain release factor class IDomain
IPR045853Peptide chain release factor class I superfamilyHomologous Superfamily
IPR005139Peptide chain release factorDomain
NA [auth OA]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
NA [auth OA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
NA [auth OA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
NA [auth OA]IPR001865Small ribosomal subunit protein uS2Family
OA [auth PA]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
OA [auth PA]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
OA [auth PA]IPR004087K Homology domainDomain
OA [auth PA]IPR004044K Homology domain, type 2Domain
OA [auth PA]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
OA [auth PA]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
OA [auth PA]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
OA [auth PA]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
PA [auth QA]IPR002942RNA-binding S4 domainDomain
PA [auth QA]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
PA [auth QA]IPR022801Small ribosomal subunit protein uS4Family
PA [auth QA]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
PA [auth QA]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
PA [auth QA]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
QA [auth RA]IPR000851Small ribosomal subunit protein uS5Family
QA [auth RA]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
QA [auth RA]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
QA [auth RA]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
QA [auth RA]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
QA [auth RA]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
QA [auth RA]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
RA [auth SA]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
RA [auth SA]IPR000529Small ribosomal subunit protein bS6Family
RA [auth SA]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
RA [auth SA]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
RA [auth SA]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
SA [auth TA]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
SA [auth TA]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
SA [auth TA]IPR000235Small ribosomal subunit protein uS7Family
SA [auth TA]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
SA [auth TA]IPR023798Small ribosomal subunit protein uS7 domainDomain
TA [auth UA]IPR000630Small ribosomal subunit protein uS8Family
TA [auth UA]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
TA [auth UA]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
UA [auth VA]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
UA [auth VA]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
UA [auth VA]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
UA [auth VA]IPR000754Small ribosomal subunit protein uS9Family
UA [auth VA]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
VA [auth WA]IPR027486Small ribosomal subunit protein uS10 domainDomain
VA [auth WA]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
VA [auth WA]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
VA [auth WA]IPR001848Small ribosomal subunit protein uS10Family
WA [auth XA]IPR001971Small ribosomal subunit protein uS11Family
WA [auth XA]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
WA [auth XA]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
WA [auth XA]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
XA [auth YA]IPR005679Ribosomal protein uS12, bacterial-typeFamily
XA [auth YA]IPR006032Small ribosomal subunit protein uS12Family
XA [auth YA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
YA [auth ZA]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
YA [auth ZA]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
YA [auth ZA]IPR001892Small ribosomal subunit protein uS13Family
YA [auth ZA]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
YA [auth ZA]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
ZA [auth AB]IPR001209Small ribosomal subunit protein uS14Family
ZA [auth AB]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
ZA [auth AB]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
AB [auth BB]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
AB [auth BB]IPR000589Small ribosomal subunit protein uS15Family
AB [auth BB]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
BB [auth CB]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
BB [auth CB]IPR000307Small ribosomal subunit protein bS16Family
BB [auth CB]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
CB [auth DB]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
CB [auth DB]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
CB [auth DB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CB [auth DB]IPR000266Small ribosomal subunit protein uS17Family
DB [auth EB]IPR001648Small ribosomal subunit protein bS18Family
DB [auth EB]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
DB [auth EB]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
EB [auth FB]IPR002222Small ribosomal subunit protein uS19Family
EB [auth FB]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
EB [auth FB]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
EB [auth FB]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
FB [auth GB]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
FB [auth GB]IPR002583Small ribosomal subunit protein bS20Family
GB [auth HB]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
GB [auth HB]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
GB [auth HB]IPR001911Small ribosomal subunit protein bS21Family