Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
NSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCore histone-like8067130 3001387 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyCore histone-like8067130 3001387 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyCore histone-like8066267 3001387 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyCore histone-like8066267 3001387 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCore histone-like8070531 3001387 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyCore histone-like8070531 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF06068e6fmlA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
APF17856e6fmlA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
APF06068e6fmlA3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
BPF06068e6fmlB2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
BPF17856e6fmlB3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
BPF06068e6fmlB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
CPF06068e6fmlC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
CPF17856e6fmlC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
CPF06068e6fmlC3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
NPF15511e6fmlN1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
RPF15511e6fmlR1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
OPF00125,PF16211e6fmlO1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
SPF00125,PF16211e6fmlS1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
TPF00125e6fmlT1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
PPF00125e6fmlP1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
DPF06068e6fmlD3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
DPF17856e6fmlD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
DPF06068e6fmlD2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
EPF06068e6fmlE2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
EPF17856e6fmlE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
EPF06068e6fmlE3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
FPF06068e6fmlF3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
FPF17856e6fmlF2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
FPF06068e6fmlF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
JPF00022e6fmlJ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00022ECOD (1.6)
MPF00125e6fmlM1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
QPF00125e6fmlQ1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF06068TIP49 P-loop domain (TIP49)TIP49 P-loop domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
A, B, C
PF17856TIP49 AAA-lid domain (TIP49_C)TIP49 AAA-lid domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
N, R
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
O, S
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
O, S
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
P, T
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D, E, F
PF06068TIP49 P-loop domain (TIP49)TIP49 P-loop domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
D, E, F
PF17856TIP49 AAA-lid domain (TIP49_C)TIP49 AAA-lid domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
PF04795PAPA-1-like conserved region (PAPA-1)PAPA-1-like conserved region- Family
PF08265YL1 nuclear protein C-terminal domain (YL1_C)YL1 nuclear protein C-terminal domainThis domain is found in proteins of the YL1 family [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1]. This domain is found in proteins that are not YL1 proteins.Domain
PF00022Actin (Actin)Actin- Family
M, Q
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
RuvB-like helicase
N, R
Histone H4
O, S
Histone H2A type 1 -
P, T
Histone H2B type 1-C/E/F/G/I
D, E, F
RuvB-like helicase
Ino80---
les2-
Ies6-
Actin related protein 5-
Nucleosomal DNA Strand 1---
Nucleosomal DNA Strand 2---
M, Q
Histone H3.2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR041048RuvB-like, AAA-lid domainDomain
A, B, C
IPR042487RuvBL1/2, DNA/RNA binding domainHomologous Superfamily
A, B, C
IPR027238RuvB-likeFamily
A, B, C
IPR010339TIP49, P-loop domainDomain
A, B, C
IPR003593AAA+ ATPase domainDomain
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N, R
IPR009072Histone-foldHomologous Superfamily
N, R
IPR035425CENP-T/Histone H4, histone foldDomain
N, R
IPR001951Histone H4Family
N, R
IPR019809Histone H4, conserved siteConserved Site
N, R
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
O, S
IPR009072Histone-foldHomologous Superfamily
O, S
IPR007125Histone H2A/H2B/H3Domain
O, S
IPR002119Histone H2AFamily
O, S
IPR032454Histone H2A, C-terminal domainDomain
O, S
IPR032458Histone H2A conserved siteConserved Site
P, T
IPR009072Histone-foldHomologous Superfamily
P, T
IPR007125Histone H2A/H2B/H3Domain
P, T
IPR000558Histone H2BFamily
D, E, F
IPR041048RuvB-like, AAA-lid domainDomain
D, E, F
IPR042487RuvBL1/2, DNA/RNA binding domainHomologous Superfamily
D, E, F
IPR027238RuvB-likeFamily
D, E, F
IPR010339TIP49, P-loop domainDomain
D, E, F
IPR003593AAA+ ATPase domainDomain
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029523INO80 complex, subunit Ies2Family
IPR006880INO80 complex subunit B-like conserved regionDomain
IPR013272Vps72/YL1, C-terminalDomain
IPR029525INO80 complex, subunit Ies6Family
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR013959DASH complex subunit Dad4Family
IPR004000Actin familyFamily
M, Q
IPR009072Histone-foldHomologous Superfamily
M, Q
IPR007125Histone H2A/H2B/H3Domain
M, Q
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
N, R
PharosP62805
O, S
PharosP0C0S8
P, T
PharosP62807
M, Q
PharosQ71DI3