1T3P

Half-sandwich arene ruthenium(II)-enzyme complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.5277NaCl, Na acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0840.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.142α = 90
b = 80.142β = 90
c = 37.064γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-02-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.20.976SRSPX14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.656.899.90.0832.36.9164972.42.417.639
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.691000.3152.47.116705

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 193L1.656.82156231562383199.880.18410.18410.18230.21741RANDOM15.348
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.4-0.40.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.336
r_scangle_it3.837
r_scbond_it2.323
r_angle_other_deg1.507
r_mcangle_it1.503
r_angle_refined_deg1.422
r_mcbond_it0.819
r_symmetry_vdw_other0.32
r_nbd_refined0.26
r_nbd_other0.254
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.336
r_scangle_it3.837
r_scbond_it2.323
r_angle_other_deg1.507
r_mcangle_it1.503
r_angle_refined_deg1.422
r_mcbond_it0.819
r_symmetry_vdw_other0.32
r_nbd_refined0.26
r_nbd_other0.254
r_xyhbond_nbd_refined0.157
r_symmetry_hbond_refined0.156
r_chiral_restr0.089
r_nbtor_other0.083
r_symmetry_vdw_refined0.066
r_metal_ion_refined0.057
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1005
Nucleic Acid Atoms
Solvent Atoms184
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing