X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1batch729812% PEG 1450, 10 mg/ml Hb, pH 7.0, batch, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.4149.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.9α = 90
b = 112.1β = 90
c = 63.7γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298AREA DETECTORSDMSgraphite1994-03-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.935096.60.05912.494469044690
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.932.0783.20.1852.95.87546

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 1HBB1.9104469039820438692.690.171360.168160.20094RANDOM19.663
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.050.3-0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.832
r_scangle_it3.787
r_dihedral_angle_1_deg3.277
r_scbond_it2.305
r_angle_refined_deg1.491
r_mcangle_it1.405
r_angle_other_deg1.056
r_mcbond_it0.699
r_symmetry_vdw_other0.245
r_nbd_refined0.224
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.832
r_scangle_it3.787
r_dihedral_angle_1_deg3.277
r_scbond_it2.305
r_angle_refined_deg1.491
r_mcangle_it1.405
r_angle_other_deg1.056
r_mcbond_it0.699
r_symmetry_vdw_other0.245
r_nbd_refined0.224
r_symmetry_vdw_refined0.223
r_xyhbond_nbd_refined0.198
r_nbd_other0.187
r_symmetry_hbond_refined0.144
r_chiral_restr0.077
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_gen_planes_other0.005
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4384
Nucleic Acid Atoms
Solvent Atoms189
Heterogen Atoms172

Software

Software
Software NamePurpose
REFMACrefinement
SDMSdata reduction
SDMSdata scaling
X-PLORphasing