X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5291cadmium sulfate, HEPES, sodium acetate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.1560.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 181.51α = 90
b = 181.51β = 90
c = 181.51γ = 90
Symmetry
Space GroupF 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4parabolic collimating mirror upstream of monochromator2004-03-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X8C1.0722NSLSX8C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.743095.30.06416.610.42545425454
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.741.8278.10.4312.22.82551

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1GWG1.75302391623916128795.540.18040.18040.178890.21046RANDOM18.404
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it4.79
r_dihedral_angle_1_deg4.497
r_scbond_it2.758
r_mcangle_it1.618
r_angle_refined_deg1.185
r_angle_other_deg0.797
r_mcbond_it0.797
r_symmetry_vdw_other0.294
r_symmetry_vdw_refined0.288
r_nbd_refined0.277
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it4.79
r_dihedral_angle_1_deg4.497
r_scbond_it2.758
r_mcangle_it1.618
r_angle_refined_deg1.185
r_angle_other_deg0.797
r_mcbond_it0.797
r_symmetry_vdw_other0.294
r_symmetry_vdw_refined0.288
r_nbd_refined0.277
r_nbd_other0.25
r_symmetry_hbond_refined0.222
r_xyhbond_nbd_refined0.192
r_nbtor_other0.085
r_chiral_restr0.074
r_metal_ion_refined0.074
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_gen_planes_other0.005
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1354
Nucleic Acid Atoms
Solvent Atoms190
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
d*TREKdata scaling