2O24

Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-Cl Complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP514% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4CL, PH 5.0, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.0339.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.989α = 90
b = 62.979β = 90
c = 69.39γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4528.684970.0740.0745.87.1382942
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.451.5395.80.3380.3382.26.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2H6V1.4528.6836954195196.520.178050.177320.19157RANDOM12.127
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02-0.390.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.914
r_dihedral_angle_3_deg15.137
r_dihedral_angle_1_deg7.527
r_dihedral_angle_4_deg7.133
r_scangle_it2.472
r_scbond_it1.789
r_angle_other_deg1.518
r_angle_refined_deg1.4
r_mcangle_it1.121
r_mcbond_it0.784
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.914
r_dihedral_angle_3_deg15.137
r_dihedral_angle_1_deg7.527
r_dihedral_angle_4_deg7.133
r_scangle_it2.472
r_scbond_it1.789
r_angle_other_deg1.518
r_angle_refined_deg1.4
r_mcangle_it1.121
r_mcbond_it0.784
r_xyhbond_nbd_refined0.273
r_nbd_refined0.262
r_symmetry_vdw_other0.239
r_nbd_other0.198
r_symmetry_hbond_refined0.188
r_nbtor_refined0.175
r_symmetry_vdw_refined0.153
r_mcbond_other0.135
r_nbtor_other0.088
r_chiral_restr0.074
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1911
Nucleic Acid Atoms
Solvent Atoms217
Heterogen Atoms3

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
ADSCdata collection
MOSFLMdata reduction