2RVQ

Solution structure of the isolated histone H2A-H2B heterodimer


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1TROSY-HN(CO)CACB0.1-0.3 mM [U-13C; U-15N; U-2H] entity_1-1, 0.1-0.3 mM [U-13C; U-15N; U-2H] entity_2-290% H2O/10% D2O4006.0ambient293
2TROSY-HNCACB0.1-0.3 mM [U-13C; U-15N; U-2H] entity_1-1, 0.1-0.3 mM [U-13C; U-15N; U-2H] entity_2-290% H2O/10% D2O4006.0ambient293
3TROSY-HN(CA)CO0.1-0.3 mM [U-13C; U-15N; U-2H] entity_1-1, 0.1-0.3 mM [U-13C; U-15N; U-2H] entity_2-290% H2O/10% D2O4006.0ambient293
4TROSY-HNCO0.1-0.3 mM [U-13C; U-15N; U-2H] entity_1-1, 0.1-0.3 mM [U-13C; U-15N; U-2H] entity_2-290% H2O/10% D2O4006.0ambient293
5HCCCONH0.1-0.3 mM [U-13C; U-15N; U-2H] entity_1-1, 0.1-0.3 mM [U-13C; U-15N; U-2H] entity_2-290% H2O/10% D2O4006.0ambient293
6TROSY-1H-15N HSQC0.1-0.3 mM [U-13C; U-15N; U-2H] entity_1-1, 0.1-0.3 mM [U-13C; U-15N; U-2H] entity_2-290% H2O/10% D2O4006.0ambient293
7TROSY-1H-13C HSQC0.1-0.3 mM [U-13C; U-15N; U-2H] entity_1-1, 0.1-0.3 mM [U-13C; U-15N; U-2H] entity_2-290% H2O/10% D2O4006.0ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
2BrukerAvance800
NMR Refinement
MethodDetailsSoftware
CS-Rosetta-AbinitioRelax, CS-Rosetta-FloppyTailThe structure of the core regions of H2A(Val27-Leu96) and H2B (Ser38-Lys125) connected by a random coil (Gly)16 poly-glycine linker was modeled by CS-Rosetta-AbinitioRelax protocol.In total 10,000 models were generated and selected the 10 models with the lowest CA-RMSD from the 20 models with the lowest CS-Rosetta energy., After the (Gly)16 poly-glycine linker was removed from each of the 10 selected structures of the H2A-H2B core, the flexible tails of H2A (Gly(-3)-Pro26 and Leu97-Lys129) and H2B (Gly(-3)-Tyr37) were connected by using MODELLER program. Next, for each of the three flexible tails,CS-Rosetta-FloppyTail protocol was used to generate 10,000 models for each of the 10 selected core structures, and selected one model with the lowest kai2 values of chemical shifts.CS-Rosetta
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number10000
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1geometry optimizationCS-RosettaShen, Vernon, Baker and Bax
2refinementCS-RosettaShen, Vernon, Baker and Bax