2VO7

Structure of PKA complexed with 4-(4-Chlorobenzyl)-1-(7H-pyrrolo(2,3- d)pyrimidin-4-yl)piperidin-4-ylamine


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3346.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.488α = 90
b = 75.143β = 90
c = 80.203γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.983395.90.042.528363
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.982.186.90.194.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9833.36283631509960.1910.1880.241RANDOM22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.24-0.03-1.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.215
r_dihedral_angle_4_deg17.626
r_dihedral_angle_3_deg14.582
r_dihedral_angle_1_deg6.146
r_angle_refined_deg1.391
r_angle_other_deg0.892
r_symmetry_vdw_other0.334
r_nbd_refined0.206
r_nbd_other0.198
r_nbtor_refined0.186
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.215
r_dihedral_angle_4_deg17.626
r_dihedral_angle_3_deg14.582
r_dihedral_angle_1_deg6.146
r_angle_refined_deg1.391
r_angle_other_deg0.892
r_symmetry_vdw_other0.334
r_nbd_refined0.206
r_nbd_other0.198
r_nbtor_refined0.186
r_symmetry_hbond_refined0.158
r_symmetry_vdw_refined0.135
r_scangle_it0.128
r_xyhbond_nbd_refined0.119
r_mcangle_it0.109
r_scbond_it0.103
r_chiral_restr0.093
r_mcbond_it0.087
r_nbtor_other0.086
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2943
Nucleic Acid Atoms
Solvent Atoms342
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement