3HC3

BHA10 IgG1 Fab double mutant variant - antibody directed at human LTBR


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829820% PEG 4000, 200 mM calcium acetate 10 mM zinc chloride and 100 mM Tris at pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.1460.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.463α = 90
b = 127.608β = 90
c = 123.253γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2008-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID1.000APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.725099.50.0766252622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.721.7694.30.483

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3HC01.7224.3626252659353317199.510.159640.158070.19033RANDOM19.787
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.16-0.370.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.906
r_dihedral_angle_4_deg21.966
r_dihedral_angle_3_deg12.407
r_dihedral_angle_1_deg6.427
r_sphericity_free5.389
r_scangle_it2.999
r_scbond_it2.18
r_sphericity_bonded1.707
r_mcangle_it1.545
r_angle_refined_deg1.348
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.906
r_dihedral_angle_4_deg21.966
r_dihedral_angle_3_deg12.407
r_dihedral_angle_1_deg6.427
r_sphericity_free5.389
r_scangle_it2.999
r_scbond_it2.18
r_sphericity_bonded1.707
r_mcangle_it1.545
r_angle_refined_deg1.348
r_rigid_bond_restr1.082
r_mcbond_it1.068
r_angle_other_deg0.832
r_symmetry_hbond_refined0.515
r_mcbond_other0.323
r_nbd_refined0.215
r_nbd_other0.196
r_symmetry_vdw_other0.192
r_nbtor_refined0.175
r_xyhbond_nbd_refined0.172
r_symmetry_vdw_refined0.158
r_chiral_restr0.084
r_nbtor_other0.084
r_metal_ion_refined0.084
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3346
Nucleic Acid Atoms
Solvent Atoms423
Heterogen Atoms14

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling