3JAO

Ciliary microtubule doublet


ELECTRON MICROSCOPY
Sample
microtubule doublet extracted from Tetrahymena cilia
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK II
Cryogen NameETHANE
Sample Vitrification DetailsBlot for 3 seconds in humid air atmosphere before plunging into liquid ethane (FEI VITROBOT MARK II).
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles10700
Reported Resolution (Å)23
Resolution MethodFSC 0.143 CUT-OFF
Other Detailsgold standard
Refinement TypeHALF-MAPS REFINED INDEPENDENTLY
Symmetry TypeHELICAL
Map-Model Fitting and Refinement
Id1 (3J6E)
Refinement SpaceREAL
Refinement ProtocolRIGID BODY FIT
Refinement TargetCross-correlation coefficient
Overall B Value
Fitting Procedure
DetailsMETHOD--kinesin binding, gradient density map analysis, and cross-correlation coefficient. The fitting for protofilament A10 as represented by BIOMT ...METHOD--kinesin binding, gradient density map analysis, and cross-correlation coefficient. The fitting for protofilament A10 as represented by BIOMT records 51-55 is ambiguous as it has been assigned using only the cross-correlation coefficient. REFINEMENT PROTOCOL--RIGID BODY DETAILS--rigid body fitting of individual dimers
Data Acquisition
Detector TypeGENERIC CCD
Electron Dose (electrons/Å**2)30
Imaging Experiment1
Date of Experiment2011-10-25
Temperature (Kelvin)90
Microscope ModelFEI TECNAI F20
Minimum Defocus (nm)1000
Maximum Defocus (nm)4000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS1.5
Imaging ModeBRIGHT FIELD
Specimen Holder ModelGATAN LIQUID NITROGEN
Nominal Magnification67000
Calibrated Magnification67000
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)200
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL FITTINGUCSF Chimera
RECONSTRUCTIONSPIDER
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
each particle