3OK0

E35A Mutant of Hen Egg White Lysozyme (HEWL)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.5291NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.0740.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.033α = 90
b = 79.033β = 90
c = 37.913γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKU RAXIS IV++Osmic mirrors2008-08-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8255.998.21124911048

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1lsb1.8227.36112491104853198.220.15730.1560.1845RANDOM21.3608
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.42-0.420.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.254
r_dihedral_angle_4_deg25.72
r_dihedral_angle_3_deg14.861
r_dihedral_angle_1_deg6.501
r_scangle_it5.871
r_scbond_it3.543
r_mcangle_it2.539
r_angle_refined_deg1.886
r_mcbond_it1.436
r_angle_other_deg1.097
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.254
r_dihedral_angle_4_deg25.72
r_dihedral_angle_3_deg14.861
r_dihedral_angle_1_deg6.501
r_scangle_it5.871
r_scbond_it3.543
r_mcangle_it2.539
r_angle_refined_deg1.886
r_mcbond_it1.436
r_angle_other_deg1.097
r_mcbond_other0.447
r_chiral_restr0.129
r_bond_refined_d0.024
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms997
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms3

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling