3WVV

Crystal Structure of RuCO/apo-E45C_C48AFr


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82931M ammonium sulfate, 20mM cadmium sulfate, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.1560.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 181.672α = 90
b = 181.672β = 90
c = 181.672γ = 90
Symmetry
Space GroupF 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS VII2014-01-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.825099.951.1211.32229716.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.821.89100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1DAT1.8225.4422297120799.640.16980.16870.19072RANDOM22.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.413
r_dihedral_angle_4_deg18.686
r_dihedral_angle_3_deg13.763
r_long_range_B_refined7.397
r_long_range_B_other7.243
r_dihedral_angle_1_deg5.78
r_scangle_other5.773
r_scbond_it3.908
r_scbond_other3.907
r_mcangle_it3.336
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.413
r_dihedral_angle_4_deg18.686
r_dihedral_angle_3_deg13.763
r_long_range_B_refined7.397
r_long_range_B_other7.243
r_dihedral_angle_1_deg5.78
r_scangle_other5.773
r_scbond_it3.908
r_scbond_other3.907
r_mcangle_it3.336
r_mcangle_other3.336
r_mcbond_it2.334
r_mcbond_other2.262
r_angle_refined_deg2.16
r_angle_other_deg1.034
r_chiral_restr0.159
r_bond_refined_d0.022
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1380
Nucleic Acid Atoms
Solvent Atoms152
Heterogen Atoms41

Software

Software
Software NamePurpose
CrystalCleardata collection
MOLREPphasing
REFMACrefinement
HKL-2000data scaling