4QGZ

X-ray structure of the adduct formed between hen egg white lysozyme and trans-dimethylamine methylamine dichlorido platinum(II)


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9637.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.92α = 90
b = 77.92β = 90
c = 36.921γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 944+mirrorsMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5155.110042464246

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5155.1401919399.760.183020.17910.25886RANDOM50.894
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.19-1.192.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.023
r_dihedral_angle_4_deg20.834
r_dihedral_angle_3_deg18.091
r_long_range_B_refined8.14
r_long_range_B_other8.034
r_dihedral_angle_1_deg6.693
r_scangle_other5.124
r_mcangle_it4.865
r_mcangle_other4.861
r_scbond_it3.417
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.023
r_dihedral_angle_4_deg20.834
r_dihedral_angle_3_deg18.091
r_long_range_B_refined8.14
r_long_range_B_other8.034
r_dihedral_angle_1_deg6.693
r_scangle_other5.124
r_mcangle_it4.865
r_mcangle_other4.861
r_scbond_it3.417
r_scbond_other3.24
r_mcbond_it3.084
r_mcbond_other3.084
r_angle_refined_deg1.453
r_angle_other_deg0.872
r_chiral_restr0.078
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms6

Software

Software
Software NamePurpose
CrystalCleardata collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling