4TQE

Structure of tau peptide in complex with Tau5 antibody Fab fragment


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2950.2M lithium sulphate, 30% PEG 4000, 0.1M Tris pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.652.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 124.865α = 90
b = 59.732β = 112.76
c = 71.041γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2011-12-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)1.2669PETRA III, EMBL c/o DESYP14 (MX2)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.665.5194.60.05610.713.1860326
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6477.80.8581.062.52

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT12E81.665.5157450304194.930.15350.151180.19715RANDOM26.795
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.02-0.511.010.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.668
r_sphericity_free25.065
r_dihedral_angle_4_deg15.52
r_dihedral_angle_3_deg12.396
r_sphericity_bonded8.35
r_dihedral_angle_1_deg6.463
r_rigid_bond_restr5.474
r_long_range_B_refined4.807
r_long_range_B_other4.807
r_scangle_other3.729
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.668
r_sphericity_free25.065
r_dihedral_angle_4_deg15.52
r_dihedral_angle_3_deg12.396
r_sphericity_bonded8.35
r_dihedral_angle_1_deg6.463
r_rigid_bond_restr5.474
r_long_range_B_refined4.807
r_long_range_B_other4.807
r_scangle_other3.729
r_mcangle_it3.528
r_mcangle_other3.528
r_scbond_it3.243
r_scbond_other3.241
r_mcbond_it2.884
r_mcbond_other2.884
r_angle_refined_deg1.37
r_angle_other_deg0.75
r_chiral_restr0.083
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3463
Nucleic Acid Atoms
Solvent Atoms377
Heterogen Atoms39

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
PHASERphasing
XSCALEdata scaling