Experiment: 5HSV

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	EVAPORATION	8.5	298	0.1 M tris pH 8.5, 0.2 M MgCl2, 20% PEG 8000

Crystal Properties
Matthews coefficient	Solvent content
2.9	44

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 37.904	α = 115.12
b = 68.443	β = 103.17
c = 71.952	γ = 93.96

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2014-09-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29	1.0332	ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.14	36.248	69.3	0.114	0.999	7.2	6.2		159748

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.14	1.16	2.6		3.225	3.912	2.179	0.131		2.3	296

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1CWA	1.5	36.248	93703	4807	98.2	0.1672	0.166	0.1898	RANDOM	29.699

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.03	-0.55	-0.41	0.29	-0.49	0.31

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.418
r_dihedral_angle_1_deg	13.471
r_dihedral_angle_3_deg	13.018
r_dihedral_angle_4_deg	12.388
r_angle_other_deg	3.857
r_mcangle_it	2.814
r_mcbond_it	2.014
r_mcbond_other	2.014
r_angle_refined_deg	1.844
r_chiral_restr	0.127

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.418
r_dihedral_angle_1_deg	13.471
r_dihedral_angle_3_deg	13.018
r_dihedral_angle_4_deg	12.388
r_angle_other_deg	3.857
r_mcangle_it	2.814
r_mcbond_it	2.014
r_mcbond_other	2.014
r_angle_refined_deg	1.844
r_chiral_restr	0.127
r_gen_planes_other	0.031
r_bond_refined_d	0.019
r_gen_planes_refined	0.015
r_bond_other_d

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5366
Nucleic Acid Atoms
Solvent Atoms	408
Heterogen Atoms	4

Software

Software
Software Name	Purpose
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MxCuBE	data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.