5OEO

Solution structure of the complex of TRPV5(655-725) with a Calmodulin E32Q/E68Q double mutant


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-15N NOESY220 uM 13C/15N Calmodulin, 220 uM hTRPV5(655-725)95% H2O/5% D2O84 mM7.41 atm308Bruker AVII 800
23D 1H-13C NOESY aliphatic220 uM 13C/15N Calmodulin, 220 uM hTRPV5(655-725)95% H2O/5% D2O84 mM7.41 atm308Bruker AVII 800
33D 1H-13C NOESY aromatic220 uM 13C/15N Calmodulin, 220 uM hTRPV5(655-725)95% H2O/5% D2O84 mM7.41 atm308Bruker AVII 800
43D 1H-13C NOESY aliphatic380 uM [U-99% 15N] Calmodulin, 380 uM [U-99% 13C; U-99% 15N] hTRPV5(655-725)95% H2O/5% D2O84 mM7.41 atm308Bruker AVII 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVI500
2BrukerAVIII600
3BrukerAVII800
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
molecular dynamicsRefinement using log-normal potentials as described by Bordeaux et al, 2011YASARA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number120
Conformers Submitted Total Number20
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCcpNmr Analysis2.4CCPN
5chemical shift assignmentAnalysisAssign3.0CCPN
2structure calculationCYANA3.97Guntert, Mumenthaler and Wuthrich
4peak pickingCcpNmr Analysis2.4CCPN
6refinementYASARA15.6Yasara Biosciences; Krieger et al.
7data analysisNMRPipe7.9Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8processingNMRPipe7.9Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax