5OMH

p38alpha in complex with pyrazolobenzothiazine inhibitor COXH11


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293.15100 mM MES pH 5.6-6.2, 20-30 % PEG4000, 50 mM BOG
Crystal Properties
Matthews coefficientSolvent content
2.2745.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.42α = 90
b = 74.98β = 90
c = 77.71γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90PIXELDECTRIS PILATUS 6M2016-10-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.00001SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55099.10.06326.7812.612754
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5699.50.963.4413.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.548.861275467299.110.218170.2150.27716RANDOM63.876
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.3-3.760.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.104
r_dihedral_angle_4_deg18.322
r_dihedral_angle_3_deg16.716
r_long_range_B_refined12.075
r_long_range_B_other12.075
r_scangle_other7.925
r_mcangle_it7.295
r_mcangle_other7.293
r_scbond_it5.424
r_scbond_other5.423
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.104
r_dihedral_angle_4_deg18.322
r_dihedral_angle_3_deg16.716
r_long_range_B_refined12.075
r_long_range_B_other12.075
r_scangle_other7.925
r_mcangle_it7.295
r_mcangle_other7.293
r_scbond_it5.424
r_scbond_other5.423
r_mcbond_it5.041
r_mcbond_other5.023
r_dihedral_angle_1_deg4.735
r_angle_refined_deg1.545
r_angle_other_deg0.972
r_chiral_restr0.08
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2517
Nucleic Acid Atoms
Solvent Atoms7
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing