5VMS

CryoEM structure of Xenopus KCNQ1 channel


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.246
r_dihedral_angle_3_deg13.416
r_long_range_B_refined13.321
r_long_range_B_other13.321
r_dihedral_angle_4_deg11.264
r_scangle_other9.641
r_mcangle_it7.466
r_mcangle_other7.465
r_scbond_it5.414
r_scbond_other5.413
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.246
r_dihedral_angle_3_deg13.416
r_long_range_B_refined13.321
r_long_range_B_other13.321
r_dihedral_angle_4_deg11.264
r_scangle_other9.641
r_mcangle_it7.466
r_mcangle_other7.465
r_scbond_it5.414
r_scbond_other5.413
r_mcbond_it4.554
r_mcbond_other4.553
r_dihedral_angle_1_deg4.283
r_angle_refined_deg1.228
r_angle_other_deg0.882
r_chiral_restr0.076
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Complex of Xenopus KCNQ1 and CaM
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details90-100% humidity
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles69415
Reported Resolution (Å)3.7
Resolution MethodFSC 0.143 CUT-OFF
Other DetailsEntry was refined using space group P4 and cell parameters a=b=c=332.8 and alpha=beta=gamma=90.
Refinement Type
Symmetry TypePOINT
Point SymmetryC4
Data Acquisition
Detector TypeDIRECT ELECTRON DE-64 (8k x 8k)
Electron Dose (electrons/Å**2)1.78
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
RECONSTRUCTIONRELION1.3
RECONSTRUCTIONFREALIGN9.03
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION