6AGR

Structure of HEWL co-crystallised with phenylethyl alcohol


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62920.1 M sodium acetate pH 4.6, 2M NaCl
Crystal Properties
Matthews coefficientSolvent content
1.9837.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.52α = 90
b = 78.52β = 90
c = 36.76γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.979ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2255.521000.06118.511.334989
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.221.280.392

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1DPX1.2255.5233179174599.950.156950.155680.18238RANDOM15.38
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.025
r_dihedral_angle_4_deg21.124
r_dihedral_angle_3_deg14.886
r_dihedral_angle_1_deg6.465
r_long_range_B_refined5.234
r_long_range_B_other5.232
r_scangle_other3.58
r_angle_refined_deg2.55
r_scbond_it2.477
r_scbond_other2.476
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.025
r_dihedral_angle_4_deg21.124
r_dihedral_angle_3_deg14.886
r_dihedral_angle_1_deg6.465
r_long_range_B_refined5.234
r_long_range_B_other5.232
r_scangle_other3.58
r_angle_refined_deg2.55
r_scbond_it2.477
r_scbond_other2.476
r_mcangle_it2.013
r_mcangle_other2.013
r_angle_other_deg1.993
r_mcbond_it1.503
r_mcbond_other1.375
r_chiral_restr0.149
r_bond_refined_d0.022
r_gen_planes_refined0.012
r_bond_other_d0.005
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1000
Nucleic Acid Atoms
Solvent Atoms210
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing