X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82930.2 M Lithium sulphate 24% w/v PEG 4000 0.1 M Tris-HCl pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.7755.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.65α = 90
b = 162.959β = 90
c = 174.601γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2017-09-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1281.481000.0840.1020.0560.99812.36.114434827.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.031000.8320.1010.7831.95.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2c9v281.48136979726199.980.22270.220760.25941RANDOM44.674
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.912.34-1.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40
r_dihedral_angle_4_deg12.582
r_dihedral_angle_3_deg11.013
r_long_range_B_refined7.12
r_long_range_B_other7.036
r_dihedral_angle_1_deg6.179
r_angle_refined_deg1.149
r_angle_other_deg0.841
r_scbond_it0.166
r_mcangle_it0.152
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40
r_dihedral_angle_4_deg12.582
r_dihedral_angle_3_deg11.013
r_long_range_B_refined7.12
r_long_range_B_other7.036
r_dihedral_angle_1_deg6.179
r_angle_refined_deg1.149
r_angle_other_deg0.841
r_scbond_it0.166
r_mcangle_it0.152
r_mcangle_other0.152
r_scangle_other0.135
r_scbond_other0.113
r_mcbond_it0.083
r_mcbond_other0.083
r_chiral_restr0.064
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13259
Nucleic Acid Atoms
Solvent Atoms1064
Heterogen Atoms77

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing