X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8293100 mM HEPES, 2.9 M ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
2.0640.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.48α = 90
b = 41.18β = 109.25
c = 84.04γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2018-02-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-11.48306ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4545.3493.80.0440.99912.63.1154486
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.451.5483.70.290.932.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.4545.3476886404795.60.152430.149730.20365RANDOM16.416
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.290.06-0.60.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.499
r_sphericity_free22.124
r_dihedral_angle_4_deg20.943
r_dihedral_angle_3_deg12.745
r_sphericity_bonded11.88
r_dihedral_angle_1_deg7.334
r_long_range_B_refined4.212
r_long_range_B_other4.05
r_rigid_bond_restr3.95
r_scangle_other3.868
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.499
r_sphericity_free22.124
r_dihedral_angle_4_deg20.943
r_dihedral_angle_3_deg12.745
r_sphericity_bonded11.88
r_dihedral_angle_1_deg7.334
r_long_range_B_refined4.212
r_long_range_B_other4.05
r_rigid_bond_restr3.95
r_scangle_other3.868
r_scbond_it3.541
r_scbond_other3.54
r_mcangle_other2.493
r_mcangle_it2.491
r_mcbond_it2.119
r_mcbond_other2.115
r_angle_refined_deg1.901
r_angle_other_deg1.077
r_chiral_restr0.102
r_bond_refined_d0.017
r_gen_planes_refined0.013
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4116
Nucleic Acid Atoms
Solvent Atoms672
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
autoSHARPphasing