6USZ

Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629323% PEG8K 0.1M NaCitrate pH 4.6 0.2M Amm Acetate
Crystal Properties
Matthews coefficientSolvent content
2.3447.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.769α = 90
b = 50.9β = 90
c = 89.649γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2MOsmic confocal mirrors2017-05-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.033093.80.11711.166.4612000
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.032.0892.40.2490.1156.16.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4L8G.pdb2.0329.7491147656793.2480.1360.13150.225716.29
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.322-0.6660.344
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.848
r_dihedral_angle_4_deg21.138
r_dihedral_angle_3_deg15.42
r_dihedral_angle_1_deg6.514
r_lrange_it5.479
r_scangle_it5.165
r_scbond_it4.37
r_rigid_bond_restr3.007
r_mcangle_it2.825
r_mcbond_it2.254
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.848
r_dihedral_angle_4_deg21.138
r_dihedral_angle_3_deg15.42
r_dihedral_angle_1_deg6.514
r_lrange_it5.479
r_scangle_it5.165
r_scbond_it4.37
r_rigid_bond_restr3.007
r_mcangle_it2.825
r_mcbond_it2.254
r_angle_refined_deg1.967
r_nbtor_refined0.318
r_nbd_refined0.23
r_symmetry_nbd_refined0.227
r_xyhbond_nbd_refined0.17
r_symmetry_xyhbond_nbd_refined0.163
r_chiral_restr0.136
r_bond_refined_d0.011
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1354
Nucleic Acid Atoms
Solvent Atoms120
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALEPACKdata scaling
PHASERphasing