6EBD

OhrB (Organic Hydroperoxide Resistance protein) mutant (C60A) from Chromobacterium violaceum, interacting with dihydrolipoamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Substrate and product-assisted catalysis: molecular aspects behind structural switches along Organic Hydroperoxide Resistance Protein catalytic cycle

Domingos, R.M.Teixeira, R.D.Zeida, A.Agudelo, W.A.Alegria, T.G.P.da Silva Neto, J.F.Vieira, P.S.Murakami, M.T.Farah, C.S.Estrin, D.A.Netto, L.E.S.

(2020) ACS Catal 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Organic hydroperoxide resistance proteinABCD161Chromobacterium violaceumMutation(s): 1 
Gene Names: CBW21_15220
Find proteins for A0A202B6V5 (Chromobacterium violaceum)
Explore A0A202B6V5 
Go to UniProtKB:  A0A202B6V5
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
J3S
Query on J3S

Download CCD File 
A, B, C
(6S)-6,8-disulfanyloctanamide
C8 H17 N O S2
VLYUGYAKYZETRF-ZETCQYMHSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.196 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 87.675α = 90
b = 87.675β = 90
c = 179.609γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Brazilian National Council for Scientific and Technological Development (CNPq)BrazilFAPESP: 2013/07937-8

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release
  • Version 1.1: 2020-05-27
    Changes: Database references