6EBD

OhrB (Organic Hydroperoxide Resistance protein) mutant (C60A) from Chromobacterium violaceum, interacting with dihydrolipoamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

OhrB (Organic Hydroperoxide Resistance protein) mutant (C60A) from Chromobacterium violaceum, interacting with dihydrolipoamide and at 2.6 Angstroms resolution

Domingos, R.M.Teixeira, R.D.Alegria, T.G.P.Vieira, P.S.Murakami, M.T.Netto, L.E.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Organic hydroperoxide resistance protein
A, B, C, D
161Chromobacterium violaceumMutation(s): 1 
Find proteins for A0A202B6V5 (Chromobacterium violaceum)
Go to UniProtKB:  A0A202B6V5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
J3S
Query on J3S

Download SDF File 
Download CCD File 
A, B, C
(6S)-6,8-disulfanyloctanamide
C8 H17 N O S2
VLYUGYAKYZETRF-ZETCQYMHSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 87.675α = 90.00
b = 87.675β = 90.00
c = 179.609γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Brazilian National Council for Scientific and Technological Development (CNPq)BrazilFAPESP: 2013/07937-8

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release