Download MendeleyCrystal structure of eKatE
Cho, H.S., Yoo, Y.To be published.
6LFK
Crystal structure of KatE from atypical E. coli
- PDB DOI: https://doi.org/10.2210/pdb6LFK/pdb
- Entry: 6LFK supersedes: 6JOA
- Classification: OXIDOREDUCTASE
- Organism(s): Escherichia coli
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-12-03 Released: 2020-12-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.223
- R-Value Work: 0.188
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| eKatE catalase | 750 | Escherichia coli | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A6I8WFM0 (Escherichia coli M8) Explore A0A6I8WFM0 Go to UniProtKB: A0A6I8WFM0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6I8WFM0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM (Subject of Investigation/LOI) Query on HEM | E [auth A], F [auth B], G [auth C], H [auth D] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.223
- R-Value Work: 0.188
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.585 | α = 90 |
| b = 178.935 | β = 106.699 |
| c = 107.279 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-12-09 Deposition Author(s): Cho, H.S., Yoo, Y., Park, J.B.
- This entry supersedes: 6JOA
Revision History (Full details and data files)
- Version 1.0: 2020-12-09
Type: Initial release - Version 1.1: 2021-04-21
Changes: Advisory - Version 1.2: 2023-11-22
Changes: Data collection, Database references, Refinement description
