6LTJ

Structure of nucleosome-bound human BAF complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.7 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of nucleosome-bound human BAF complex

Shuang, H.Zihan, W.Yuan, T.Zishuo, Y.Jiali, Y.Xinxin, W.Jie, L.Bijun, L.Yanhui, X.

(2020) Science --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone H3.3
A, E
136Xenopus laevisMutation(s): 0 
Find proteins for Q6PI79 (Xenopus laevis)
Go to UniProtKB:  Q6PI79
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Histone H4
B, F
103Xenopus laevisMutation(s): 0 
Find proteins for P62799 (Xenopus laevis)
Go to UniProtKB:  P62799
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Histone H2A type 1
C, G
130Xenopus laevisMutation(s): 0 
Find proteins for P06897 (Xenopus laevis)
Go to UniProtKB:  P06897
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Histone H2B
D, H
126Xenopus laevisMutation(s): 0 
Gene Names: H2B
Find proteins for Q92131 (Xenopus laevis)
Go to UniProtKB:  Q92131
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Transcription activator BRG1
I
1647Homo sapiensMutation(s): 0 
Gene Names: SMARCA4 (BAF190A, BRG1, SNF2B, SNF2L4)
EC: 3.6.4.-
Find proteins for P51532 (Homo sapiens)
Go to Gene View: SMARCA4
Go to UniProtKB:  P51532
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
Actin-like protein 6A
J
407Homo sapiensMutation(s): 0 
Gene Names: ACTL6A (BAF53, BAF53A, INO80K)
Find proteins for O96019 (Homo sapiens)
Go to Gene View: ACTL6A
Go to UniProtKB:  O96019
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
Actin, cytoplasmic 1
K
375Homo sapiensMutation(s): 0 
Gene Names: ACTB
Find proteins for P60709 (Homo sapiens)
Go to Gene View: ACTB
Go to UniProtKB:  P60709
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
AT-rich interactive domain-containing protein 1A
L
1295Homo sapiensMutation(s): 0 
Gene Names: ARID1A (BAF250, BAF250A, C1orf4, OSA1, SMARCF1)
Find proteins for O14497 (Homo sapiens)
Go to Gene View: ARID1A
Go to UniProtKB:  O14497
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
M
336Homo sapiensMutation(s): 0 
Gene Names: SMARCB1 (BAF47, INI1, SNF5L1)
Find proteins for Q12824 (Homo sapiens)
Go to Gene View: SMARCB1
Go to UniProtKB:  Q12824
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
SWI/SNF complex subunit SMARCC2
N, O
1214Homo sapiensMutation(s): 0 
Gene Names: SMARCC2 (BAF170)
Find proteins for Q8TAQ2 (Homo sapiens)
Go to Gene View: SMARCC2
Go to UniProtKB:  Q8TAQ2
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
P
515Homo sapiensMutation(s): 0 
Gene Names: SMARCD1 (BAF60A)
Find proteins for Q96GM5 (Homo sapiens)
Go to Gene View: SMARCD1
Go to UniProtKB:  Q96GM5
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Q
411Homo sapiensMutation(s): 0 
Gene Names: SMARCE1 (BAF57)
Find proteins for Q969G3 (Homo sapiens)
Go to Gene View: SMARCE1
Go to UniProtKB:  Q969G3
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
Zinc finger protein ubi-d4
R
292Homo sapiensMutation(s): 0 
Gene Names: DPF2 (BAF45D, REQ, UBID4)
Find proteins for Q92785 (Homo sapiens)
Go to Gene View: DPF2
Go to UniProtKB:  Q92785
Entity ID: 14
MoleculeChainsLengthOrganism
DNA (119-MER)X119Homo sapiens
Entity ID: 15
MoleculeChainsLengthOrganism
DNA (119-MER)Y119Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
L
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.7 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release