1DV4 | pdb_00001dv4

PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth E]	d1dv4e_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
C [auth G]	d1dv4g_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth E]	SCOP2B Superfamily	dsRNA-binding domain-like	8035098	3000985	SCOP2B (2022-06-29)
B [auth E]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8034422	3000100	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	Ribosomal protein S7	8033523	3000799	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth E]		e1dv4E1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
C [auth G]		e1dv4G1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth G]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth E]	RIBOSOMAL PROTEIN S5	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis response to stimulus response to chemical response to antibiotic biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis response to stimulus response to chemical response to antibiotic biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
C [auth G]	RIBOSOMAL PROTEIN S7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
A	16S RIBOSOMAL RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth E]	IPR000851	Small ribosomal subunit protein uS5	Family
B [auth E]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
B [auth E]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
B [auth E]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
B [auth E]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
B [auth E]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
B [auth E]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
C [auth G]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
C [auth G]	IPR000235	Small ribosomal subunit protein uS7	Family
C [auth G]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
C [auth G]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
C [auth G]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.