1EF8
CRYSTAL STRUCTURE OF METHYLMALONYL COA DECARBOXYLASE
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ef8a_ | Alpha and beta proteins (a/b) | ClpP/crotonase | ClpP/crotonase | Crotonase-like | Methylmalonyl CoA decarboxylase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1ef8b_ | Alpha and beta proteins (a/b) | ClpP/crotonase | ClpP/crotonase | Crotonase-like | Methylmalonyl CoA decarboxylase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
C | d1ef8c_ | Alpha and beta proteins (a/b) | ClpP/crotonase | ClpP/crotonase | Crotonase-like | Methylmalonyl CoA decarboxylase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Crotonase-like | 8057995 | 4000036 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ClpP/crotonase | 8057996 | 3000033 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | ClpP/crotonase | 8057996 | 3000033 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ClpP/crotonase | 8057996 | 3000033 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ECH_1 | e1ef8A1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: ECH_1 | ECOD (1.6) |
B | ECH_1 | e1ef8B1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: ECH_1 | ECOD (1.6) |
C | ECH_1 | e1ef8C1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: ECH_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.12.10 | Mainly Alpha | Orthogonal Bundle | Lyase 2-enoyl-coa Hydratase | Chain A, domain 2 | CATH (4.3.0) |
A | 3.90.226.10 | Alpha Beta | Alpha-Beta Complex | 2-enoyl-CoA Hydratase | Chain A, domain 1 | CATH (4.3.0) |
B | 1.10.12.10 | Mainly Alpha | Orthogonal Bundle | Lyase 2-enoyl-coa Hydratase | Chain A, domain 2 | CATH (4.3.0) |
B | 3.90.226.10 | Alpha Beta | Alpha-Beta Complex | 2-enoyl-CoA Hydratase | Chain A, domain 1 | CATH (4.3.0) |
C | 1.10.12.10 | Mainly Alpha | Orthogonal Bundle | Lyase 2-enoyl-coa Hydratase | Chain A, domain 2 | CATH (4.3.0) |
C | 3.90.226.10 | Alpha Beta | Alpha-Beta Complex | 2-enoyl-CoA Hydratase | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00378 | Enoyl-CoA hydratase/isomerase (ECH_1) | Enoyl-CoA hydratase/isomerase | This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001753 | Enoyl-CoA hydratase/isomerase | Family | |
IPR029045 | ClpP/crotonase-like domain superfamily | Homologous Superfamily | |
IPR018376 | Enoyl-CoA hydratase/isomerase, conserved site | Conserved Site | |
IPR014748 | Enoyl-CoA hydratase, C-terminal | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
methylmalonyl-CoA decarboxylase M-CSA #70 | Methylmalonyl-CoA decarboxylase (MMCD) is a member of the cronotase super family, a collection of enzymes characterised by the presence of oxy anion intermediates or transition states with a significant localisation of negative charge in their reactions. The breadth of catalytic action within this family is demonstrated by the spread of associated enzymes across all six of the Enzyme Commission classes. | EC: 4.1.1.41 (PDB Primary Data) EC: 4.1.1 (UniProt) |