1GAO | pdb_00001gao

CRYSTAL STRUCTURE OF THE L44S MUTANT OF FERREDOXIN I

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1gaod_	Alpha and beta proteins (a+b)	Ferredoxin-like	4Fe-4S ferredoxins	7-Fe ferredoxin	Ferredoxin	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
C	d1gaoc_	Alpha and beta proteins (a+b)	Ferredoxin-like	4Fe-4S ferredoxins	7-Fe ferredoxin	Ferredoxin	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
B	d1gaob_	Alpha and beta proteins (a+b)	Ferredoxin-like	4Fe-4S ferredoxins	7-Fe ferredoxin	Ferredoxin	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
A	d1gaoa_	Alpha and beta proteins (a+b)	Ferredoxin-like	4Fe-4S ferredoxins	7-Fe ferredoxin	Ferredoxin	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	4Fe-4S ferredoxins	8035236	3000020	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	4Fe-4S ferredoxins	8035236	3000020	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	4Fe-4S ferredoxins	8035236	3000020	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	4Fe-4S ferredoxins	8035236	3000020	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Fer4,DUF3470	e1gaoD1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Fer4,DUF3470	ECOD (develop294)
C	Fer4,DUF3470	e1gaoC1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Fer4,DUF3470	ECOD (develop294)
B	Fer4,DUF3470	e1gaoB1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Fer4,DUF3470	ECOD (develop294)
A	Fer4,DUF3470	e1gaoA1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Fer4,DUF3470	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.70.20	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
C	3.30.70.20	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.20	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
A	3.30.70.20	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	FERREDOXIN I	DNA binding binding nucleic acid binding iron-sulfur cluster binding 3 iron, 4 sulfur cluster binding metal cluster binding small molecule binding 4 iron, 4 sulfur cluster binding electron transfer activity cation binding ion binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
A, B, C, D	IPR054829	Ferredoxin-1	Family
A, B, C, D	IPR022569	Ferredoxin, C-terminal	Domain
A, B, C, D	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
A, B, C, D	IPR050294	Ion-translocating oxidoreductase complex subunit B	Family
A, B, C, D	IPR000813	7Fe ferredoxin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.